miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12651 5' -50.6 NC_003345.1 + 42804 0.66 0.962626
Target:  5'- aAUCGGGGUCGUcgUuguaucgcuucacGUCCUCgauguaCCGAUu -3'
miRNA:   3'- aUAGCUCCAGCA--A-------------UAGGAGa-----GGCUAc -5'
12651 5' -50.6 NC_003345.1 + 15437 0.66 0.959179
Target:  5'- -cUCGGGGUCGUcGU--UCUCCGGg- -3'
miRNA:   3'- auAGCUCCAGCAaUAggAGAGGCUac -5'
12651 5' -50.6 NC_003345.1 + 42813 0.66 0.959179
Target:  5'- -uUCGGuuuauGGUCGcUAUCCUCcCCGAg- -3'
miRNA:   3'- auAGCU-----CCAGCaAUAGGAGaGGCUac -5'
12651 5' -50.6 NC_003345.1 + 46429 0.66 0.950753
Target:  5'- cGUCGuAGGUCGgagcAUCCUCgCUGAg- -3'
miRNA:   3'- aUAGC-UCCAGCaa--UAGGAGaGGCUac -5'
12651 5' -50.6 NC_003345.1 + 77156 0.66 0.950753
Target:  5'- cAUCGAGGguggUGUCCUCaUCUGAc- -3'
miRNA:   3'- aUAGCUCCagcaAUAGGAG-AGGCUac -5'
12651 5' -50.6 NC_003345.1 + 9710 0.67 0.946133
Target:  5'- cGUCcGGGUCGUacAUCCgccaCUCCGAUu -3'
miRNA:   3'- aUAGcUCCAGCAa-UAGGa---GAGGCUAc -5'
12651 5' -50.6 NC_003345.1 + 37191 0.67 0.930607
Target:  5'- -uUCGuGGUCGgu-UCCgCUCCGAc- -3'
miRNA:   3'- auAGCuCCAGCaauAGGaGAGGCUac -5'
12651 5' -50.6 NC_003345.1 + 38870 0.69 0.876129
Target:  5'- aGUCGGGGUgaUGUguUCCUCgauuagcUCCGGUGg -3'
miRNA:   3'- aUAGCUCCA--GCAauAGGAG-------AGGCUAC- -5'
12651 5' -50.6 NC_003345.1 + 3811 0.69 0.860813
Target:  5'- cAUCGA-GUCgGUUGUCCcCUCCGAg- -3'
miRNA:   3'- aUAGCUcCAG-CAAUAGGaGAGGCUac -5'
12651 5' -50.6 NC_003345.1 + 29536 0.7 0.834861
Target:  5'- uUGUCGuAGGUCGau-UCCaUCUCgGAUGa -3'
miRNA:   3'- -AUAGC-UCCAGCaauAGG-AGAGgCUAC- -5'
12651 5' -50.6 NC_003345.1 + 31492 0.71 0.797263
Target:  5'- --cCGAccucGGUUGcUAUCCUCUCCGAa- -3'
miRNA:   3'- auaGCU----CCAGCaAUAGGAGAGGCUac -5'
12651 5' -50.6 NC_003345.1 + 45773 0.8 0.311984
Target:  5'- cAUCGAGGUCGUUuUCCUCcagcgUCCGAa- -3'
miRNA:   3'- aUAGCUCCAGCAAuAGGAG-----AGGCUac -5'
12651 5' -50.6 NC_003345.1 + 58557 1.08 0.005415
Target:  5'- uUAUCGAGGUCGUUAUCCUCUCCGAUGa -3'
miRNA:   3'- -AUAGCUCCAGCAAUAGGAGAGGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.