miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12653 5' -48 NC_003345.1 + 60032 0.66 0.995413
Target:  5'- gUCAAAGaCGGCGGCcugaaUCGGAGCGa---- -3'
miRNA:   3'- -GGUUUC-GCUGUUG-----AGCCUUGCacuau -5'
12653 5' -48 NC_003345.1 + 3629 0.67 0.990135
Target:  5'- gCGGAGCGGCcuacaccggAGCUUGG-AUGUGAa- -3'
miRNA:   3'- gGUUUCGCUG---------UUGAGCCuUGCACUau -5'
12653 5' -48 NC_003345.1 + 76943 0.67 0.988657
Target:  5'- uCCAcGGCGAaaaCAACUUGGGG-GUGAg- -3'
miRNA:   3'- -GGUuUCGCU---GUUGAGCCUUgCACUau -5'
12653 5' -48 NC_003345.1 + 8549 0.67 0.985192
Target:  5'- cCCAAcacGGCGACGACcCGGAGaaaacccaccUGUGGg- -3'
miRNA:   3'- -GGUU---UCGCUGUUGaGCCUU----------GCACUau -5'
12653 5' -48 NC_003345.1 + 58870 0.68 0.975912
Target:  5'- uCCAGuAGCGugAACUCGGAGuucuucaucuuCuUGAUAg -3'
miRNA:   3'- -GGUU-UCGCugUUGAGCCUU-----------GcACUAU- -5'
12653 5' -48 NC_003345.1 + 9079 0.68 0.973041
Target:  5'- --uGGGCGGCGAUuaUCGGAGCG-GAg- -3'
miRNA:   3'- gguUUCGCUGUUG--AGCCUUGCaCUau -5'
12653 5' -48 NC_003345.1 + 25241 0.69 0.966572
Target:  5'- gUCGAAGCGuAUAug-CGGGACGUGGa- -3'
miRNA:   3'- -GGUUUCGC-UGUugaGCCUUGCACUau -5'
12653 5' -48 NC_003345.1 + 34300 0.69 0.962957
Target:  5'- aCCucAGCGAcCAGCUCaccguGGACGUGAa- -3'
miRNA:   3'- -GGuuUCGCU-GUUGAGc----CUUGCACUau -5'
12653 5' -48 NC_003345.1 + 39978 0.69 0.954929
Target:  5'- cUCGAugauAGCGACGACUCuGGAuUGUGGg- -3'
miRNA:   3'- -GGUU----UCGCUGUUGAG-CCUuGCACUau -5'
12653 5' -48 NC_003345.1 + 46742 0.7 0.940807
Target:  5'- cCCGccGCGuC-AUUUGGGACGUGAUGa -3'
miRNA:   3'- -GGUuuCGCuGuUGAGCCUUGCACUAU- -5'
12653 5' -48 NC_003345.1 + 46476 0.7 0.929961
Target:  5'- gCCAGcGGCGACcuuucGACUCGGGAggcCGUGGa- -3'
miRNA:   3'- -GGUU-UCGCUG-----UUGAGCCUU---GCACUau -5'
12653 5' -48 NC_003345.1 + 55042 0.75 0.75238
Target:  5'- cCCGGAGCGGgGACggcGAGCGUGGUGa -3'
miRNA:   3'- -GGUUUCGCUgUUGagcCUUGCACUAU- -5'
12653 5' -48 NC_003345.1 + 9483 0.75 0.75238
Target:  5'- uCCAGAGCGuCGGCUUGGucuuccggguCGUGGUAg -3'
miRNA:   3'- -GGUUUCGCuGUUGAGCCuu--------GCACUAU- -5'
12653 5' -48 NC_003345.1 + 55452 0.76 0.707958
Target:  5'- cCCAAcaccggaggggguGGCGGCggUUCaGAGCGUGAUAg -3'
miRNA:   3'- -GGUU-------------UCGCUGuuGAGcCUUGCACUAU- -5'
12653 5' -48 NC_003345.1 + 1479 0.77 0.630651
Target:  5'- uCCuuAGCGACAGCUaUGGAaACGUGAa- -3'
miRNA:   3'- -GGuuUCGCUGUUGA-GCCU-UGCACUau -5'
12653 5' -48 NC_003345.1 + 59062 1.1 0.007322
Target:  5'- cCCAAAGCGACAACUCGGAACGUGAUAg -3'
miRNA:   3'- -GGUUUCGCUGUUGAGCCUUGCACUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.