Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12654 | 5' | -55.9 | NC_003345.1 | + | 72303 | 0.66 | 0.780255 |
Target: 5'- ---uGCGucGUcgucgucggGGCCACCGCCGcCCGg -3' miRNA: 3'- cauuCGCucCA---------UCGGUGGUGGCuGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 33673 | 0.66 | 0.770426 |
Target: 5'- --cAGCGGGaGU-GCCucgaaGCCGCCGACgCAa -3' miRNA: 3'- cauUCGCUC-CAuCGG-----UGGUGGCUG-GU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 47302 | 0.66 | 0.76046 |
Target: 5'- -aGAGCGGGGguggcgucgGGuacgccuucucCCACCuCCGACCGa -3' miRNA: 3'- caUUCGCUCCa--------UC-----------GGUGGuGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 41348 | 0.66 | 0.740161 |
Target: 5'- uUAGGcCGAGGUGcGCCACCGaguUCGAUg- -3' miRNA: 3'- cAUUC-GCUCCAU-CGGUGGU---GGCUGgu -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 63670 | 0.67 | 0.719444 |
Target: 5'- -cGAGUGGGGgcGCUcCUGCCGACg- -3' miRNA: 3'- caUUCGCUCCauCGGuGGUGGCUGgu -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 18502 | 0.67 | 0.719444 |
Target: 5'- -cGAGUcGGGaGGCCACCG-CGACCu -3' miRNA: 3'- caUUCGcUCCaUCGGUGGUgGCUGGu -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 42390 | 0.67 | 0.71316 |
Target: 5'- -cGGGCGAGGUcacaaaaaucaguccGGCgACC-CgCGACCGa -3' miRNA: 3'- caUUCGCUCCA---------------UCGgUGGuG-GCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 63235 | 0.67 | 0.708956 |
Target: 5'- -cGGGCGAcucGGUGgacuacGCUACUGCCGACUAc -3' miRNA: 3'- caUUCGCU---CCAU------CGGUGGUGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 69855 | 0.67 | 0.677099 |
Target: 5'- cUGAGCGAagacguugauGGUAacaccaucgucGUCGCCGCCGACgCAg -3' miRNA: 3'- cAUUCGCU----------CCAU-----------CGGUGGUGGCUG-GU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 32659 | 0.67 | 0.666385 |
Target: 5'- -aGAGCGcGGU-GUCAaCGCCGACCGc -3' miRNA: 3'- caUUCGCuCCAuCGGUgGUGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 49266 | 0.67 | 0.666385 |
Target: 5'- cUAAGCGAGGa---CGCUcCCGACCAc -3' miRNA: 3'- cAUUCGCUCCaucgGUGGuGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 69125 | 0.68 | 0.644873 |
Target: 5'- ---cGCaGAGGUuccucgaaaAGUCACCuCCGACCAc -3' miRNA: 3'- cauuCG-CUCCA---------UCGGUGGuGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 63402 | 0.68 | 0.634097 |
Target: 5'- gGUGAGCGAGGacgcauccgaugUGGUCuuuACCAUCGACgGg -3' miRNA: 3'- -CAUUCGCUCC------------AUCGG---UGGUGGCUGgU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 59446 | 0.69 | 0.569708 |
Target: 5'- -aAGGCGAuGaAGCCGaaaggcCCGCCGACCAc -3' miRNA: 3'- caUUCGCUcCaUCGGU------GGUGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 8769 | 0.69 | 0.559101 |
Target: 5'- --cAGCGAGGUGGCCgaGCUAauCgGGCCGc -3' miRNA: 3'- cauUCGCUCCAUCGG--UGGU--GgCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 23219 | 0.7 | 0.530761 |
Target: 5'- -aGAGCGGGcgucaugcggucuuuGUAGUggaacagCGCCACCGACCGg -3' miRNA: 3'- caUUCGCUC---------------CAUCG-------GUGGUGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 74553 | 0.7 | 0.527644 |
Target: 5'- aUAGGUGGaaUGGCCGCC-CCGACCu -3' miRNA: 3'- cAUUCGCUccAUCGGUGGuGGCUGGu -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 66869 | 0.71 | 0.486789 |
Target: 5'- cGUAGGCGuGGagguucugaUAGCCACCcCCGAacaCCAu -3' miRNA: 3'- -CAUUCGCuCC---------AUCGGUGGuGGCU---GGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 7436 | 0.76 | 0.229858 |
Target: 5'- ---uGCuuGGUAGCCGCgACCGGCCAg -3' miRNA: 3'- cauuCGcuCCAUCGGUGgUGGCUGGU- -5' |
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12654 | 5' | -55.9 | NC_003345.1 | + | 59369 | 1.08 | 0.001376 |
Target: 5'- uGUAAGCGAGGUAGCCACCACCGACCAg -3' miRNA: 3'- -CAUUCGCUCCAUCGGUGGUGGCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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