miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12654 5' -55.9 NC_003345.1 + 72303 0.66 0.780255
Target:  5'- ---uGCGucGUcgucgucggGGCCACCGCCGcCCGg -3'
miRNA:   3'- cauuCGCucCA---------UCGGUGGUGGCuGGU- -5'
12654 5' -55.9 NC_003345.1 + 33673 0.66 0.770426
Target:  5'- --cAGCGGGaGU-GCCucgaaGCCGCCGACgCAa -3'
miRNA:   3'- cauUCGCUC-CAuCGG-----UGGUGGCUG-GU- -5'
12654 5' -55.9 NC_003345.1 + 47302 0.66 0.76046
Target:  5'- -aGAGCGGGGguggcgucgGGuacgccuucucCCACCuCCGACCGa -3'
miRNA:   3'- caUUCGCUCCa--------UC-----------GGUGGuGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 41348 0.66 0.740161
Target:  5'- uUAGGcCGAGGUGcGCCACCGaguUCGAUg- -3'
miRNA:   3'- cAUUC-GCUCCAU-CGGUGGU---GGCUGgu -5'
12654 5' -55.9 NC_003345.1 + 63670 0.67 0.719444
Target:  5'- -cGAGUGGGGgcGCUcCUGCCGACg- -3'
miRNA:   3'- caUUCGCUCCauCGGuGGUGGCUGgu -5'
12654 5' -55.9 NC_003345.1 + 18502 0.67 0.719444
Target:  5'- -cGAGUcGGGaGGCCACCG-CGACCu -3'
miRNA:   3'- caUUCGcUCCaUCGGUGGUgGCUGGu -5'
12654 5' -55.9 NC_003345.1 + 42390 0.67 0.71316
Target:  5'- -cGGGCGAGGUcacaaaaaucaguccGGCgACC-CgCGACCGa -3'
miRNA:   3'- caUUCGCUCCA---------------UCGgUGGuG-GCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 63235 0.67 0.708956
Target:  5'- -cGGGCGAcucGGUGgacuacGCUACUGCCGACUAc -3'
miRNA:   3'- caUUCGCU---CCAU------CGGUGGUGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 69855 0.67 0.677099
Target:  5'- cUGAGCGAagacguugauGGUAacaccaucgucGUCGCCGCCGACgCAg -3'
miRNA:   3'- cAUUCGCU----------CCAU-----------CGGUGGUGGCUG-GU- -5'
12654 5' -55.9 NC_003345.1 + 32659 0.67 0.666385
Target:  5'- -aGAGCGcGGU-GUCAaCGCCGACCGc -3'
miRNA:   3'- caUUCGCuCCAuCGGUgGUGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 49266 0.67 0.666385
Target:  5'- cUAAGCGAGGa---CGCUcCCGACCAc -3'
miRNA:   3'- cAUUCGCUCCaucgGUGGuGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 69125 0.68 0.644873
Target:  5'- ---cGCaGAGGUuccucgaaaAGUCACCuCCGACCAc -3'
miRNA:   3'- cauuCG-CUCCA---------UCGGUGGuGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 63402 0.68 0.634097
Target:  5'- gGUGAGCGAGGacgcauccgaugUGGUCuuuACCAUCGACgGg -3'
miRNA:   3'- -CAUUCGCUCC------------AUCGG---UGGUGGCUGgU- -5'
12654 5' -55.9 NC_003345.1 + 59446 0.69 0.569708
Target:  5'- -aAGGCGAuGaAGCCGaaaggcCCGCCGACCAc -3'
miRNA:   3'- caUUCGCUcCaUCGGU------GGUGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 8769 0.69 0.559101
Target:  5'- --cAGCGAGGUGGCCgaGCUAauCgGGCCGc -3'
miRNA:   3'- cauUCGCUCCAUCGG--UGGU--GgCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 23219 0.7 0.530761
Target:  5'- -aGAGCGGGcgucaugcggucuuuGUAGUggaacagCGCCACCGACCGg -3'
miRNA:   3'- caUUCGCUC---------------CAUCG-------GUGGUGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 74553 0.7 0.527644
Target:  5'- aUAGGUGGaaUGGCCGCC-CCGACCu -3'
miRNA:   3'- cAUUCGCUccAUCGGUGGuGGCUGGu -5'
12654 5' -55.9 NC_003345.1 + 66869 0.71 0.486789
Target:  5'- cGUAGGCGuGGagguucugaUAGCCACCcCCGAacaCCAu -3'
miRNA:   3'- -CAUUCGCuCC---------AUCGGUGGuGGCU---GGU- -5'
12654 5' -55.9 NC_003345.1 + 7436 0.76 0.229858
Target:  5'- ---uGCuuGGUAGCCGCgACCGGCCAg -3'
miRNA:   3'- cauuCGcuCCAUCGGUGgUGGCUGGU- -5'
12654 5' -55.9 NC_003345.1 + 59369 1.08 0.001376
Target:  5'- uGUAAGCGAGGUAGCCACCACCGACCAg -3'
miRNA:   3'- -CAUUCGCUCCAUCGGUGGUGGCUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.