Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 17766 | 0.66 | 0.843296 |
Target: 5'- uGuuGGCCGccGUGAGGUggUCGUGGGa -3' miRNA: 3'- uCuuCCGGCu-CACUUCGuuGGCGUCU- -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 46455 | 0.66 | 0.806189 |
Target: 5'- cGGGAGGCCgugGAGUGGuacuucgAGacuGCCGUGGAc -3' miRNA: 3'- -UCUUCCGG---CUCACU-------UCgu-UGGCGUCU- -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 45602 | 0.66 | 0.810889 |
Target: 5'- uGAAGGCCGAcGUGgcGCGguuaucaagggccugACCGUg-- -3' miRNA: 3'- uCUUCCGGCU-CACuuCGU---------------UGGCGucu -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 67209 | 0.66 | 0.843296 |
Target: 5'- aAGAcaAGGCCGAGgaaGAAGCGcCCGa--- -3' miRNA: 3'- -UCU--UCCGGCUCa--CUUCGUuGGCgucu -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 56712 | 0.66 | 0.843296 |
Target: 5'- cGAcucAGGCCGAGcuUGAuGCucaCGCAGGa -3' miRNA: 3'- uCU---UCCGGCUC--ACUuCGuugGCGUCU- -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 49789 | 0.67 | 0.787927 |
Target: 5'- cGGAAGGCuCGAaucucUGAAGCAAUCgaGCAGu -3' miRNA: 3'- -UCUUCCG-GCUc----ACUUCGUUGG--CGUCu -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 5278 | 0.67 | 0.757947 |
Target: 5'- uGAAGGCUGGauUGGAuGUAuucGCCGCAGAg -3' miRNA: 3'- uCUUCCGGCUc-ACUU-CGU---UGGCGUCU- -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 62853 | 0.67 | 0.778079 |
Target: 5'- cGGAGGCCagcguaggccccGAcGUGGAGUAGCCcuCAGAg -3' miRNA: 3'- uCUUCCGG------------CU-CACUUCGUUGGc-GUCU- -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 30385 | 0.68 | 0.726827 |
Target: 5'- cGGuAGGCCGcucGggGCAuauccucuccGCCGCAGGa -3' miRNA: 3'- -UCuUCCGGCucaCuuCGU----------UGGCGUCU- -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 21336 | 0.68 | 0.737309 |
Target: 5'- cAGGAGGCUGuccGUGAgGGCGAcgacCCGguGAg -3' miRNA: 3'- -UCUUCCGGCu--CACU-UCGUU----GGCguCU- -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 29790 | 0.7 | 0.586027 |
Target: 5'- aAGAAGcGcCCGAuaccGUGggGCGACCGCc-- -3' miRNA: 3'- -UCUUC-C-GGCU----CACuuCGUUGGCGucu -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 23301 | 0.72 | 0.510441 |
Target: 5'- cGAAGGCCGAGauucagaUGGAgaugcGCGACCGUGGu -3' miRNA: 3'- uCUUCCGGCUC-------ACUU-----CGUUGGCGUCu -5' |
|||||||
12655 | 3' | -54.2 | NC_003345.1 | + | 59433 | 1.09 | 0.001773 |
Target: 5'- gAGAAGGCCGAGUGAAGCAACCGCAGAc -3' miRNA: 3'- -UCUUCCGGCUCACUUCGUUGGCGUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home