miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12655 5' -50.8 NC_003345.1 + 36456 0.66 0.966722
Target:  5'- --gUCACGGuUCGaCCAcGGC-CCGAgCg -3'
miRNA:   3'- gaaAGUGCC-AGC-GGUaUCGuGGUUgG- -5'
12655 5' -50.8 NC_003345.1 + 7755 0.66 0.963192
Target:  5'- ---aCAcCGGaCGCCGUAGCuccguucuUCGACCg -3'
miRNA:   3'- gaaaGU-GCCaGCGGUAUCGu-------GGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 16816 0.66 0.959017
Target:  5'- -cUUCACGGcggucgUGCCAcgUuccccgauuguagAGCAUCAGCCg -3'
miRNA:   3'- gaAAGUGCCa-----GCGGU--A-------------UCGUGGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 2131 0.66 0.954949
Target:  5'- --gUCGuagaGGUCGCUAacgugguUAGCGCCGAUg -3'
miRNA:   3'- gaaAGUg---CCAGCGGU-------AUCGUGGUUGg -5'
12655 5' -50.8 NC_003345.1 + 62947 0.66 0.95106
Target:  5'- -gUUCGCcgGGUCgagGCCGggaacAGCGCCGACg -3'
miRNA:   3'- gaAAGUG--CCAG---CGGUa----UCGUGGUUGg -5'
12655 5' -50.8 NC_003345.1 + 19933 0.67 0.946484
Target:  5'- --gUCGCGGUCGUCGUcGUuacuGCCGAa- -3'
miRNA:   3'- gaaAGUGCCAGCGGUAuCG----UGGUUgg -5'
12655 5' -50.8 NC_003345.1 + 46380 0.67 0.946484
Target:  5'- --gUCGaaaGGUCGCCGcUGGCuacguccuCCAGCUu -3'
miRNA:   3'- gaaAGUg--CCAGCGGU-AUCGu-------GGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 28869 0.67 0.946484
Target:  5'- --aUCGCcggGGUCGCCG-GGUACUAcCCg -3'
miRNA:   3'- gaaAGUG---CCAGCGGUaUCGUGGUuGG- -5'
12655 5' -50.8 NC_003345.1 + 4884 0.68 0.91322
Target:  5'- --gUCuCGGUCGUCGUAGCuCgAugCg -3'
miRNA:   3'- gaaAGuGCCAGCGGUAUCGuGgUugG- -5'
12655 5' -50.8 NC_003345.1 + 39657 0.69 0.853636
Target:  5'- gCUUUCuGCGugaGCCAUAGCucgucCCGACCg -3'
miRNA:   3'- -GAAAG-UGCcagCGGUAUCGu----GGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 12573 0.69 0.852789
Target:  5'- -cUUCGuagaGGUCGCCGUcccaaAGCGCCGagaagaagugaccGCCg -3'
miRNA:   3'- gaAAGUg---CCAGCGGUA-----UCGUGGU-------------UGG- -5'
12655 5' -50.8 NC_003345.1 + 11930 0.7 0.808595
Target:  5'- ----aACGGUCGCCGUAGaggUCAACUc -3'
miRNA:   3'- gaaagUGCCAGCGGUAUCgu-GGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 30911 0.71 0.7892
Target:  5'- ----uGCGGUCGUaGUAGUugUAGCCg -3'
miRNA:   3'- gaaagUGCCAGCGgUAUCGugGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 14582 0.72 0.727413
Target:  5'- ---cCACGG-CGCuCGUGGguCGCCAGCCg -3'
miRNA:   3'- gaaaGUGCCaGCG-GUAUC--GUGGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 63016 0.72 0.716711
Target:  5'- -gUUgACGGUCGCCugAGCAUCcuCCg -3'
miRNA:   3'- gaAAgUGCCAGCGGuaUCGUGGuuGG- -5'
12655 5' -50.8 NC_003345.1 + 73087 0.73 0.683049
Target:  5'- ----aACGGUCGCCAUAGCGaggucguCCuuCCc -3'
miRNA:   3'- gaaagUGCCAGCGGUAUCGU-------GGuuGG- -5'
12655 5' -50.8 NC_003345.1 + 65558 0.73 0.673174
Target:  5'- gCUUcUACGGUCGUCGUGaCACCcACCu -3'
miRNA:   3'- -GAAaGUGCCAGCGGUAUcGUGGuUGG- -5'
12655 5' -50.8 NC_003345.1 + 14411 0.74 0.638962
Target:  5'- --gUCugcCGGUCGCCAUcgagguaguggucAGCguACCAGCCa -3'
miRNA:   3'- gaaAGu--GCCAGCGGUA-------------UCG--UGGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 9657 0.75 0.563013
Target:  5'- ---cCACGaGUCGCCGUGaacaaCGCCGACCg -3'
miRNA:   3'- gaaaGUGC-CAGCGGUAUc----GUGGUUGG- -5'
12655 5' -50.8 NC_003345.1 + 59470 1.14 0.002144
Target:  5'- cCUUUCACGGUCGCCAUAGCACCAACCg -3'
miRNA:   3'- -GAAAGUGCCAGCGGUAUCGUGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.