miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12656 5' -49.7 NC_003345.1 + 13620 0.66 0.974667
Target:  5'- cGGUCAGCCGuuUCGCCGuCG-UAGUAu -3'
miRNA:   3'- cUCAGUUGGUuuGGUGGC-GCaGUUAU- -5'
12656 5' -49.7 NC_003345.1 + 36325 0.66 0.974667
Target:  5'- aAGUUAGCCAAcuCCAUCGaGUCGAUu -3'
miRNA:   3'- cUCAGUUGGUUu-GGUGGCgCAGUUAu -5'
12656 5' -49.7 NC_003345.1 + 50835 0.66 0.97438
Target:  5'- -uGUUAACgGGACUcucaaagucaaucGCCGCGUCGGUu -3'
miRNA:   3'- cuCAGUUGgUUUGG-------------UGGCGCAGUUAu -5'
12656 5' -49.7 NC_003345.1 + 68037 0.66 0.971684
Target:  5'- cGGUCAAUCGGACUgACCGCGa----- -3'
miRNA:   3'- cUCAGUUGGUUUGG-UGGCGCaguuau -5'
12656 5' -49.7 NC_003345.1 + 70613 0.66 0.968457
Target:  5'- ---cCGACCGAGCCAUCG-GUCAu-- -3'
miRNA:   3'- cucaGUUGGUUUGGUGGCgCAGUuau -5'
12656 5' -49.7 NC_003345.1 + 63392 0.67 0.961235
Target:  5'- aGGUCAACC--GCgACCGCGUa---- -3'
miRNA:   3'- cUCAGUUGGuuUGgUGGCGCAguuau -5'
12656 5' -49.7 NC_003345.1 + 31705 0.67 0.955969
Target:  5'- aGGGUCGuaugcgaccauaucACCGuucaggaaAGCCGCCGUGUCGu-- -3'
miRNA:   3'- -CUCAGU--------------UGGU--------UUGGUGGCGCAGUuau -5'
12656 5' -49.7 NC_003345.1 + 59734 0.67 0.952941
Target:  5'- cAGUCAGCCGAugUACCGgG-CGc-- -3'
miRNA:   3'- cUCAGUUGGUUugGUGGCgCaGUuau -5'
12656 5' -49.7 NC_003345.1 + 74011 0.67 0.94353
Target:  5'- uGGUCuuCCAAgaacGCCAUCuCGUCAAUAa -3'
miRNA:   3'- cUCAGuuGGUU----UGGUGGcGCAGUUAU- -5'
12656 5' -49.7 NC_003345.1 + 31698 0.67 0.94353
Target:  5'- cGAGUCGcACCGGAaaaCACCGCGaaGAa- -3'
miRNA:   3'- -CUCAGU-UGGUUUg--GUGGCGCagUUau -5'
12656 5' -49.7 NC_003345.1 + 3009 0.68 0.938395
Target:  5'- gGAGUCgAACCccgGAGCCGCCGCuaaggGUUAAa- -3'
miRNA:   3'- -CUCAG-UUGG---UUUGGUGGCG-----CAGUUau -5'
12656 5' -49.7 NC_003345.1 + 68166 0.68 0.927253
Target:  5'- cGGGUCGccauACCAAuCCACCucaGCGUCGu-- -3'
miRNA:   3'- -CUCAGU----UGGUUuGGUGG---CGCAGUuau -5'
12656 5' -49.7 NC_003345.1 + 21514 0.68 0.921244
Target:  5'- ---aCGACCucgaAGGCCGCCGUGUCAu-- -3'
miRNA:   3'- cucaGUUGG----UUUGGUGGCGCAGUuau -5'
12656 5' -49.7 NC_003345.1 + 51402 0.69 0.894311
Target:  5'- aGAGaacgUAACgCGAACCuguggguucgucGCCGCGUCGAUAg -3'
miRNA:   3'- -CUCa---GUUG-GUUUGG------------UGGCGCAGUUAU- -5'
12656 5' -49.7 NC_003345.1 + 34416 0.7 0.862916
Target:  5'- cAGUCGcagACCGGACuCGCCGCGUUc--- -3'
miRNA:   3'- cUCAGU---UGGUUUG-GUGGCGCAGuuau -5'
12656 5' -49.7 NC_003345.1 + 24752 0.7 0.845665
Target:  5'- cGGGUCuuucACCGAACCACgGCGcUCGc-- -3'
miRNA:   3'- -CUCAGu---UGGUUUGGUGgCGC-AGUuau -5'
12656 5' -49.7 NC_003345.1 + 46761 0.71 0.818037
Target:  5'- uGGUgAGCCGAuggagcuucCCGCCGCGUCAu-- -3'
miRNA:   3'- cUCAgUUGGUUu--------GGUGGCGCAGUuau -5'
12656 5' -49.7 NC_003345.1 + 59665 1.07 0.006302
Target:  5'- uGAGUCAACCAAACCACCGCGUCAAUAa -3'
miRNA:   3'- -CUCAGUUGGUUUGGUGGCGCAGUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.