Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12657 | 5' | -57.2 | NC_003345.1 | + | 60158 | 1.06 | 0.001519 |
Target: 5'- gUGGCCGACCAAACCGAGGCCGAUGAAc -3' miRNA: 3'- -ACCGGCUGGUUUGGCUCCGGCUACUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 30342 | 0.66 | 0.700778 |
Target: 5'- aGcCCGACC--ACCGAGGgagauuCCGGUGGAg -3' miRNA: 3'- aCcGGCUGGuuUGGCUCC------GGCUACUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 40435 | 0.66 | 0.690221 |
Target: 5'- gUGGUagucuuCGACCAuGuuGAGGCCGAa--- -3' miRNA: 3'- -ACCG------GCUGGUuUggCUCCGGCUacuu -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 38561 | 0.66 | 0.679612 |
Target: 5'- aUGGaaGACgGAacccugcucuGCCGAGGUCGcgGAAa -3' miRNA: 3'- -ACCggCUGgUU----------UGGCUCCGGCuaCUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 61043 | 0.66 | 0.679612 |
Target: 5'- aGcGCCGACCAuuACCGccGCCGAc--- -3' miRNA: 3'- aC-CGGCUGGUu-UGGCucCGGCUacuu -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 33073 | 0.66 | 0.668959 |
Target: 5'- gGGCCGACCGccAACCcgccgGAGGaaaCCGA-GAAg -3' miRNA: 3'- aCCGGCUGGU--UUGG-----CUCC---GGCUaCUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 23649 | 0.73 | 0.305857 |
Target: 5'- aGGUCGAagaagcGACCGAGGCCGAgGAAg -3' miRNA: 3'- aCCGGCUggu---UUGGCUCCGGCUaCUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 831 | 0.77 | 0.170307 |
Target: 5'- gGGCCGACCGgggagacggAACCGGGGCgGAauUGAc -3' miRNA: 3'- aCCGGCUGGU---------UUGGCUCCGgCU--ACUu -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 682 | 0.72 | 0.364275 |
Target: 5'- gGGCCGACCGccccgguuaacaucaAACCGGGGCgGGc--- -3' miRNA: 3'- aCCGGCUGGU---------------UUGGCUCCGgCUacuu -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 63418 | 0.68 | 0.541197 |
Target: 5'- -cGCUGGCCGA---GGGGCCGGUGAGc -3' miRNA: 3'- acCGGCUGGUUuggCUCCGGCUACUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 77000 | 0.68 | 0.562168 |
Target: 5'- cUGGUCGAgCCAAuCCG-GGUCGAUGu- -3' miRNA: 3'- -ACCGGCU-GGUUuGGCuCCGGCUACuu -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 35840 | 0.68 | 0.583352 |
Target: 5'- -uGCCcACgGAaGCCGGGGUCGAUGAAg -3' miRNA: 3'- acCGGcUGgUU-UGGCUCCGGCUACUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 42853 | 0.67 | 0.58974 |
Target: 5'- aGGCCGACgAuguggggugucguACaGAGGUCGGUGAGg -3' miRNA: 3'- aCCGGCUGgUu------------UGgCUCCGGCUACUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 77569 | 0.67 | 0.626118 |
Target: 5'- gGGCCGACCGGcCCGAgagacgGGCaGggGAGa -3' miRNA: 3'- aCCGGCUGGUUuGGCU------CCGgCuaCUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 282 | 0.67 | 0.626118 |
Target: 5'- gGGCCGACCGGcCCGAgagacgGGCaGggGAGa -3' miRNA: 3'- aCCGGCUGGUUuGGCU------CCGgCuaCUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 75425 | 0.66 | 0.668959 |
Target: 5'- cGGuuccCCGGCguAACCGGGGCCGc-GAGg -3' miRNA: 3'- aCC----GGCUGguUUGGCUCCGGCuaCUU- -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 916 | 0.66 | 0.679612 |
Target: 5'- cGGUCGGCCcguAACaGGGGCCGGa--- -3' miRNA: 3'- aCCGGCUGGu--UUGgCUCCGGCUacuu -5' |
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12657 | 5' | -57.2 | NC_003345.1 | + | 32528 | 0.75 | 0.210019 |
Target: 5'- aGGCCguGACCG--UCGAGGUCGAUGAAg -3' miRNA: 3'- aCCGG--CUGGUuuGGCUCCGGCUACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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