miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12658 3' -53.3 NC_003345.1 + 60046 0.66 0.883535
Target:  5'- cCUGAAUcggAGCGAAagucUGC-AUCgAGGGCUGg -3'
miRNA:   3'- -GACUUG---UCGCUU----GCGuUAG-UCCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 136 0.66 0.87597
Target:  5'- -gGGACAGgGGACG-----GGGGCCGg -3'
miRNA:   3'- gaCUUGUCgCUUGCguuagUCCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 77423 0.66 0.87597
Target:  5'- -gGGACAGgGGACG-----GGGGCCGg -3'
miRNA:   3'- gaCUUGUCgCUUGCguuagUCCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 34846 0.66 0.860102
Target:  5'- -cGAGCGGCcaucacggGAACGUcGUCGGGGUUc -3'
miRNA:   3'- gaCUUGUCG--------CUUGCGuUAGUCCCGGc -5'
12658 3' -53.3 NC_003345.1 + 26705 0.66 0.860102
Target:  5'- -cGAGCGGCuacuuCGCAGUCcGGGCa- -3'
miRNA:   3'- gaCUUGUCGcuu--GCGUUAGuCCCGgc -5'
12658 3' -53.3 NC_003345.1 + 55033 0.67 0.851812
Target:  5'- -gGGACGGCGAGCGUggUgaaUAGuGGCg- -3'
miRNA:   3'- gaCUUGUCGCUUGCGuuA---GUC-CCGgc -5'
12658 3' -53.3 NC_003345.1 + 20372 0.67 0.851812
Target:  5'- uUGG--AGCGAGCGguAcuUCcGGGCCGg -3'
miRNA:   3'- gACUugUCGCUUGCguU--AGuCCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 76787 0.67 0.851812
Target:  5'- -cGGGgAGCGcACGaCAcgCgAGGGCCGg -3'
miRNA:   3'- gaCUUgUCGCuUGC-GUuaG-UCCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 30678 0.67 0.843296
Target:  5'- -gGAACcgagAGgGAACGCGGUC-GGGCUu -3'
miRNA:   3'- gaCUUG----UCgCUUGCGUUAGuCCCGGc -5'
12658 3' -53.3 NC_003345.1 + 61989 0.68 0.793759
Target:  5'- cCUGAGCaucguagauaAGCGAcucgAUGCuaacaggcucguuGUCGGGGCCGu -3'
miRNA:   3'- -GACUUG----------UCGCU----UGCGu------------UAGUCCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 17500 0.69 0.716252
Target:  5'- -cGAACAGCccGAACacgGCAGUCugAGGGUCGc -3'
miRNA:   3'- gaCUUGUCG--CUUG---CGUUAG--UCCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 61354 0.7 0.694868
Target:  5'- -gGGGCcGCGAGCGUAAUCuucGGCCu -3'
miRNA:   3'- gaCUUGuCGCUUGCGUUAGuc-CCGGc -5'
12658 3' -53.3 NC_003345.1 + 14226 0.71 0.607783
Target:  5'- aUGAACGuCGuguCGCAAUCGGGGCa- -3'
miRNA:   3'- gACUUGUcGCuu-GCGUUAGUCCCGgc -5'
12658 3' -53.3 NC_003345.1 + 54145 0.72 0.586027
Target:  5'- uUGAACccGGCGcuAACGCGaacGUCGGGGCUa -3'
miRNA:   3'- gACUUG--UCGC--UUGCGU---UAGUCCCGGc -5'
12658 3' -53.3 NC_003345.1 + 42877 0.73 0.480712
Target:  5'- -aGGACAGCGAACGgGugaauGUCGaGGCCGa -3'
miRNA:   3'- gaCUUGUCGCUUGCgU-----UAGUcCCGGC- -5'
12658 3' -53.3 NC_003345.1 + 60235 1.1 0.001938
Target:  5'- cCUGAACAGCGAACGCAAUCAGGGCCGg -3'
miRNA:   3'- -GACUUGUCGCUUGCGUUAGUCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.