miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1266 3' -50.1 NC_001317.1 + 17256 1.06 0.002063
Target:  5'- aUCACCGCCGCUUUUCGCAAUGAUGAUu -3'
miRNA:   3'- -AGUGGCGGCGAAAAGCGUUACUACUA- -5'
1266 3' -50.1 NC_001317.1 + 16440 0.69 0.604293
Target:  5'- aCGCUGCagCGcCUUUUCGCGccauGUGAUGAg -3'
miRNA:   3'- aGUGGCG--GC-GAAAAGCGU----UACUACUa -5'
1266 3' -50.1 NC_001317.1 + 13193 0.67 0.7471
Target:  5'- aUCACCGCCGCcgucaUCGCcauuacUGAUGc- -3'
miRNA:   3'- -AGUGGCGGCGaaa--AGCGuu----ACUACua -5'
1266 3' -50.1 NC_001317.1 + 12238 0.72 0.431459
Target:  5'- cCGCUGCCaGUUUUUCggcuccgGCAGUGGUGAUa -3'
miRNA:   3'- aGUGGCGG-CGAAAAG-------CGUUACUACUA- -5'
1266 3' -50.1 NC_001317.1 + 8241 0.66 0.802108
Target:  5'- cCGCCaGCCGUg---CGCcaGAUGGUGAc -3'
miRNA:   3'- aGUGG-CGGCGaaaaGCG--UUACUACUa -5'
1266 3' -50.1 NC_001317.1 + 5726 0.73 0.38169
Target:  5'- cCACCGCCGCa----GCAuUGAUGAa -3'
miRNA:   3'- aGUGGCGGCGaaaagCGUuACUACUa -5'
1266 3' -50.1 NC_001317.1 + 4747 0.7 0.551736
Target:  5'- cCACCGCCGCUggcuuucgugcgUCGCGGcUGGcUGAa -3'
miRNA:   3'- aGUGGCGGCGAaa----------AGCGUU-ACU-ACUa -5'
1266 3' -50.1 NC_001317.1 + 3488 0.66 0.802108
Target:  5'- gUCACCGCCugacuuuugcgGCUUg--GCGAUGAgcUGAa -3'
miRNA:   3'- -AGUGGCGG-----------CGAAaagCGUUACU--ACUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.