miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12660 5' -60.2 NC_003345.1 + 41185 0.66 0.592664
Target:  5'- gUCGUCCUugauuuguuccaucuCGUGUUCGAggaAgGCGAGGUGu -3'
miRNA:   3'- -AGUAGGG---------------GCGCGGGCU---UgCGCUCCAC- -5'
12660 5' -60.2 NC_003345.1 + 40618 0.66 0.588552
Target:  5'- aUAUaccaCCCGCGCCCGAACccauCGAGu-- -3'
miRNA:   3'- aGUAg---GGGCGCGGGCUUGc---GCUCcac -5'
12660 5' -60.2 NC_003345.1 + 24131 0.66 0.568078
Target:  5'- gUUGUCCCCGuCGUCCGuGugGCcccGAGGg- -3'
miRNA:   3'- -AGUAGGGGC-GCGGGC-UugCG---CUCCac -5'
12660 5' -60.2 NC_003345.1 + 40256 0.67 0.527729
Target:  5'- --uUCUCCGCGUguUCGGGCGUGAacuuGGUGg -3'
miRNA:   3'- aguAGGGGCGCG--GGCUUGCGCU----CCAC- -5'
12660 5' -60.2 NC_003345.1 + 34749 0.67 0.507952
Target:  5'- aCGUUCCCGUGauggCCGcuCGCGGGGa- -3'
miRNA:   3'- aGUAGGGGCGCg---GGCuuGCGCUCCac -5'
12660 5' -60.2 NC_003345.1 + 75422 0.67 0.498181
Target:  5'- --uUCCCCgGCGUaaCCGGGgcCGCGAGGUc -3'
miRNA:   3'- aguAGGGG-CGCG--GGCUU--GCGCUCCAc -5'
12660 5' -60.2 NC_003345.1 + 64404 0.69 0.380227
Target:  5'- uUCAUgcaCCCCG-GCCCGAACG-GGGGc- -3'
miRNA:   3'- -AGUA---GGGGCgCGGGCUUGCgCUCCac -5'
12660 5' -60.2 NC_003345.1 + 60748 0.74 0.181346
Target:  5'- cCA-CCUCGCGUUCGGGCGCGGGGaUGa -3'
miRNA:   3'- aGUaGGGGCGCGGGCUUGCGCUCC-AC- -5'
12660 5' -60.2 NC_003345.1 + 46343 0.75 0.167987
Target:  5'- cCAUCCCCGaGauuaCCGAGCGCGucGGUGg -3'
miRNA:   3'- aGUAGGGGCgCg---GGCUUGCGCu-CCAC- -5'
12660 5' -60.2 NC_003345.1 + 60923 0.75 0.163734
Target:  5'- aCGUCCCCG-GCCUGAAgGuCGAGGUc -3'
miRNA:   3'- aGUAGGGGCgCGGGCUUgC-GCUCCAc -5'
12660 5' -60.2 NC_003345.1 + 60645 1.09 0.00061
Target:  5'- cUCAUCCCCGCGCCCGAACGCGAGGUGg -3'
miRNA:   3'- -AGUAGGGGCGCGGGCUUGCGCUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.