Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12661 | 3' | -49.3 | NC_003345.1 | + | 60859 | 1.01 | 0.022289 |
Target: 5'- aGGAGAAGUCGAAGUCGUCC-CAAGAGc -3' miRNA: 3'- -CCUCUUCAGCUUCAGCAGGaGUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 21623 | 0.76 | 0.62746 |
Target: 5'- aGGAGAGGaugacacggcggccuUCGAGGUCGUCacggaguUCGAGAGc -3' miRNA: 3'- -CCUCUUC---------------AGCUUCAGCAGg------AGUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 28628 | 0.72 | 0.813322 |
Target: 5'- cGGuguuGAAGUCGAAgGUCGUCUcgaAGGAGa -3' miRNA: 3'- -CCu---CUUCAGCUU-CAGCAGGag-UUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 19533 | 0.72 | 0.83181 |
Target: 5'- cGAGc-GUCGGAGuuUCGUCaCUCGGGAGg -3' miRNA: 3'- cCUCuuCAGCUUC--AGCAG-GAGUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 2558 | 0.72 | 0.840739 |
Target: 5'- cGGAGAAGUCGAAGUCGa---UGAGAc -3' miRNA: 3'- -CCUCUUCAGCUUCAGCaggaGUUCUc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 70099 | 0.7 | 0.896561 |
Target: 5'- aGAGAAGUUugccAGcUCGUCCUCAccgAGAGg -3' miRNA: 3'- cCUCUUCAGcu--UC-AGCAGGAGU---UCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 41193 | 0.7 | 0.916548 |
Target: 5'- ----cGGUCGAGGUCGUCCUUGAu-- -3' miRNA: 3'- ccucuUCAGCUUCAGCAGGAGUUcuc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 31103 | 0.7 | 0.916548 |
Target: 5'- cGGGGAAcggauguucgucGUCGggGuggagacacauuUCGUCC-CGAGAGg -3' miRNA: 3'- -CCUCUU------------CAGCuuC------------AGCAGGaGUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 26556 | 0.69 | 0.928482 |
Target: 5'- cGAGAGGUCG----CGUUCUCAAGAa -3' miRNA: 3'- cCUCUUCAGCuucaGCAGGAGUUCUc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 32152 | 0.68 | 0.948993 |
Target: 5'- gGGAGAGGUCGc-GUCGUUCUUcucgaagucguGGGAa -3' miRNA: 3'- -CCUCUUCAGCuuCAGCAGGAG-----------UUCUc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 26130 | 0.68 | 0.961513 |
Target: 5'- aGGcaauGUCGAAGUCGUgCUgGAGAa -3' miRNA: 3'- -CCucuuCAGCUUCAGCAgGAgUUCUc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 27134 | 0.68 | 0.965164 |
Target: 5'- cGAGAAGuUCGAGGUCGccgcgcugaagUCUCAGGuAGa -3' miRNA: 3'- cCUCUUC-AGCUUCAGCa----------GGAGUUC-UC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 42953 | 0.68 | 0.965164 |
Target: 5'- aGuGAAGUCGcGGUUGUCCUCu---- -3' miRNA: 3'- cCuCUUCAGCuUCAGCAGGAGuucuc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 27916 | 0.67 | 0.971723 |
Target: 5'- cGGAGgcGUuguucucgUGAGcGUCGgaccCCUCAGGAGa -3' miRNA: 3'- -CCUCuuCA--------GCUU-CAGCa---GGAGUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 20586 | 0.67 | 0.974646 |
Target: 5'- aGAGAGGccauccgcUCGAAcGUCGUCagCGAGAGa -3' miRNA: 3'- cCUCUUC--------AGCUU-CAGCAGgaGUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 8526 | 0.67 | 0.974646 |
Target: 5'- cGAGGuGGUgcuUGAGGUCGUCCaccaCGAGAGc -3' miRNA: 3'- cCUCU-UCA---GCUUCAGCAGGa---GUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 73083 | 0.67 | 0.977343 |
Target: 5'- cGAGAacGGUcgccauagCGAGGUCGUCCuucccaUCGGGGGc -3' miRNA: 3'- cCUCU--UCA--------GCUUCAGCAGG------AGUUCUC- -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 51776 | 0.67 | 0.977343 |
Target: 5'- --cGAAGUCGggGUCaaCCUCGAa-- -3' miRNA: 3'- ccuCUUCAGCuuCAGcaGGAGUUcuc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 33259 | 0.67 | 0.980755 |
Target: 5'- aGGGAAG-CGAGGUCGauuccgaccacguucUCCUUGAGGc -3' miRNA: 3'- cCUCUUCaGCUUCAGC---------------AGGAGUUCUc -5' |
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12661 | 3' | -49.3 | NC_003345.1 | + | 67145 | 0.66 | 0.986054 |
Target: 5'- cGGAcGGGUCGggGUCGUUCcCAc--- -3' miRNA: 3'- -CCUcUUCAGCuuCAGCAGGaGUucuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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