miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12663 5' -50.3 NC_003345.1 + 35689 0.66 0.975778
Target:  5'- aCGGACgUAGCucGGuCGGGCGGCUcGGCc -3'
miRNA:   3'- aGUCUG-AUUG--UC-GCUCGCUGAaCUGc -5'
12663 5' -50.3 NC_003345.1 + 21695 0.66 0.975504
Target:  5'- cUCGGGCgguucCAGCGgcuccAGCGGCUcgcucggUGGCGa -3'
miRNA:   3'- -AGUCUGauu--GUCGC-----UCGCUGA-------ACUGC- -5'
12663 5' -50.3 NC_003345.1 + 26710 0.66 0.97294
Target:  5'- --cGACccgaaGGCGGCGGGuCGAgUUGACGc -3'
miRNA:   3'- aguCUGa----UUGUCGCUC-GCUgAACUGC- -5'
12663 5' -50.3 NC_003345.1 + 50483 0.66 0.97294
Target:  5'- -aAGACUGGCucguuuCGGGUGGCUaugUGACGc -3'
miRNA:   3'- agUCUGAUUGuc----GCUCGCUGA---ACUGC- -5'
12663 5' -50.3 NC_003345.1 + 9991 0.66 0.969869
Target:  5'- uUCuGAUgAAUAGUGAGCGAaa-GACGa -3'
miRNA:   3'- -AGuCUGaUUGUCGCUCGCUgaaCUGC- -5'
12663 5' -50.3 NC_003345.1 + 53213 0.66 0.966557
Target:  5'- -gAGAUUGACGGCGAGaCGACc----- -3'
miRNA:   3'- agUCUGAUUGUCGCUC-GCUGaacugc -5'
12663 5' -50.3 NC_003345.1 + 47545 0.66 0.959179
Target:  5'- gCGGuCUucuACGGUGAGCGAuucgucaacgguCUUGAUGg -3'
miRNA:   3'- aGUCuGAu--UGUCGCUCGCU------------GAACUGC- -5'
12663 5' -50.3 NC_003345.1 + 55396 0.67 0.9551
Target:  5'- cUCAGACgcauACGGUG-GUGACggUGGCu -3'
miRNA:   3'- -AGUCUGau--UGUCGCuCGCUGa-ACUGc -5'
12663 5' -50.3 NC_003345.1 + 55041 0.67 0.954252
Target:  5'- cCGGAgCgggGACGGCGAGCGuggugaauagUGGCGa -3'
miRNA:   3'- aGUCU-Ga--UUGUCGCUCGCuga-------ACUGC- -5'
12663 5' -50.3 NC_003345.1 + 1113 0.67 0.936063
Target:  5'- -gGGGCggaaAACAGgGGGCGGCccGGCGa -3'
miRNA:   3'- agUCUGa---UUGUCgCUCGCUGaaCUGC- -5'
12663 5' -50.3 NC_003345.1 + 26488 0.67 0.936063
Target:  5'- aCGGAUgauUGACGGCGAGCuGAUggagGGCu -3'
miRNA:   3'- aGUCUG---AUUGUCGCUCG-CUGaa--CUGc -5'
12663 5' -50.3 NC_003345.1 + 55927 0.67 0.934456
Target:  5'- aCGGucAC-AACGGCGAggacuccaccuucgGUGACUUGACGg -3'
miRNA:   3'- aGUC--UGaUUGUCGCU--------------CGCUGAACUGC- -5'
12663 5' -50.3 NC_003345.1 + 64641 0.69 0.891976
Target:  5'- cUCGGcCUGuucCGGUucaucGGGCGGCUUGACGu -3'
miRNA:   3'- -AGUCuGAUu--GUCG-----CUCGCUGAACUGC- -5'
12663 5' -50.3 NC_003345.1 + 11154 0.7 0.843741
Target:  5'- --cGGCgAACAGgGAgGCGACUUGGCu -3'
miRNA:   3'- aguCUGaUUGUCgCU-CGCUGAACUGc -5'
12663 5' -50.3 NC_003345.1 + 68031 0.8 0.35271
Target:  5'- aUCGGACUGACcGCGAGUauGGCUcUGACGa -3'
miRNA:   3'- -AGUCUGAUUGuCGCUCG--CUGA-ACUGC- -5'
12663 5' -50.3 NC_003345.1 + 62778 1.11 0.00355
Target:  5'- uUCAGACUAACAGCGAGCGACUUGACGg -3'
miRNA:   3'- -AGUCUGAUUGUCGCUCGCUGAACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.