miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12665 3' -60.3 NC_003345.1 + 63309 0.66 0.490134
Target:  5'- -aUGCGUccucgcuCACCGGC-CCCUCGGCcAGc -3'
miRNA:   3'- ugACGCG-------GUGGUCGuGGGAGUCGcUC- -5'
12665 3' -60.3 NC_003345.1 + 50643 0.67 0.471637
Target:  5'- ---uCGCCACCuGCGuuCUUGGCGAGa -3'
miRNA:   3'- ugacGCGGUGGuCGUggGAGUCGCUC- -5'
12665 3' -60.3 NC_003345.1 + 69476 0.68 0.380749
Target:  5'- uCUGCGUCacGCCGcCGCCCggAGCGAGa -3'
miRNA:   3'- uGACGCGG--UGGUcGUGGGagUCGCUC- -5'
12665 3' -60.3 NC_003345.1 + 3356 0.72 0.236956
Target:  5'- --aGCGCCGCCGGUACUuCUCGGCu-- -3'
miRNA:   3'- ugaCGCGGUGGUCGUGG-GAGUCGcuc -5'
12665 3' -60.3 NC_003345.1 + 71122 0.75 0.141536
Target:  5'- -aUGCGUaggagaUACCAGCACCCgUAGCGAGa -3'
miRNA:   3'- ugACGCG------GUGGUCGUGGGaGUCGCUC- -5'
12665 3' -60.3 NC_003345.1 + 63079 1.08 0.000514
Target:  5'- aACUGCGCCACCAGCACCCUCAGCGAGa -3'
miRNA:   3'- -UGACGCGGUGGUCGUGGGAGUCGCUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.