miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12665 5' -57.3 NC_003345.1 + 4620 0.66 0.701302
Target:  5'- aGCCuGCCGG--AGUCGGUGGaGGUa -3'
miRNA:   3'- aCGGuCGGCUcaUCAGCCGUCaUCGc -5'
12665 5' -57.3 NC_003345.1 + 33854 0.66 0.680231
Target:  5'- -aCCGGCaCGGGUcGGUCGGCAucccGUacucGGCGg -3'
miRNA:   3'- acGGUCG-GCUCA-UCAGCCGU----CA----UCGC- -5'
12665 5' -57.3 NC_003345.1 + 73542 0.66 0.680231
Target:  5'- gGCCGGUaucacuccauCGAGUcggcagaacccGG-CGGCGGUGGCu -3'
miRNA:   3'- aCGGUCG----------GCUCA-----------UCaGCCGUCAUCGc -5'
12665 5' -57.3 NC_003345.1 + 14565 0.67 0.637651
Target:  5'- cGCCAGCCGAcGUucccGGUgGGUAGUuacucacGCu -3'
miRNA:   3'- aCGGUCGGCU-CA----UCAgCCGUCAu------CGc -5'
12665 5' -57.3 NC_003345.1 + 72417 0.67 0.616295
Target:  5'- aGCC-GCCGGG----CGGCGGUGGCc -3'
miRNA:   3'- aCGGuCGGCUCaucaGCCGUCAUCGc -5'
12665 5' -57.3 NC_003345.1 + 57834 0.67 0.605632
Target:  5'- aGCC-GCCaAGUGGUCGauucCAGUAGCc -3'
miRNA:   3'- aCGGuCGGcUCAUCAGCc---GUCAUCGc -5'
12665 5' -57.3 NC_003345.1 + 63418 0.67 0.59499
Target:  5'- cGCUGGCCGAGgGGcCGGUg--AGCGa -3'
miRNA:   3'- aCGGUCGGCUCaUCaGCCGucaUCGC- -5'
12665 5' -57.3 NC_003345.1 + 63546 0.69 0.501428
Target:  5'- gGUCAGCCuguccgacGAGUcccacGUCGGCAGgAGCGc -3'
miRNA:   3'- aCGGUCGG--------CUCAu----CAGCCGUCaUCGC- -5'
12665 5' -57.3 NC_003345.1 + 63113 1.08 0.001012
Target:  5'- uUGCCAGCCGAGUAGUCGGCAGUAGCGu -3'
miRNA:   3'- -ACGGUCGGCUCAUCAGCCGUCAUCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.