Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12666 | 5' | -53.6 | NC_003345.1 | + | 14601 | 0.67 | 0.828603 |
Target: 5'- gGGAGCGGUcUgGAGCGUuccacGGCgCUCGUg -3' miRNA: 3'- gUCUUGUCAuAgCUCGCA-----UCG-GGGCA- -5' |
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12666 | 5' | -53.6 | NC_003345.1 | + | 76146 | 0.7 | 0.633544 |
Target: 5'- uUAGAGCAGUAUCGuGU-UGGCCCauCGUa -3' miRNA: 3'- -GUCUUGUCAUAGCuCGcAUCGGG--GCA- -5' |
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12666 | 5' | -53.6 | NC_003345.1 | + | 54019 | 0.71 | 0.600845 |
Target: 5'- gAGAGCcGUaAUCGAGU-UAGCCCCGa -3' miRNA: 3'- gUCUUGuCA-UAGCUCGcAUCGGGGCa -5' |
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12666 | 5' | -53.6 | NC_003345.1 | + | 63261 | 1.07 | 0.003083 |
Target: 5'- cCAGAACAGUAUCGAGCGUAGCCCCGUc -3' miRNA: 3'- -GUCUUGUCAUAGCUCGCAUCGGGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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