miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12668 5' -56.9 NC_003345.1 + 58912 0.66 0.746833
Target:  5'- aUguCCUCACCacGGCauugcugucccucgCGUCGUAGCUc -3'
miRNA:   3'- -AguGGAGUGGaaCCG--------------GCAGCAUCGGc -5'
12668 5' -56.9 NC_003345.1 + 45370 0.66 0.729641
Target:  5'- cUCACCUCGCCcuugagguauagUUcgagaaGGUCGUCGUcgcGGUCGc -3'
miRNA:   3'- -AGUGGAGUGG------------AA------CCGGCAGCA---UCGGC- -5'
12668 5' -56.9 NC_003345.1 + 35173 0.66 0.719403
Target:  5'- --uCCUCGgCggGGCCGUCGUAcuGuCCGa -3'
miRNA:   3'- aguGGAGUgGaaCCGGCAGCAU--C-GGC- -5'
12668 5' -56.9 NC_003345.1 + 65640 0.67 0.667209
Target:  5'- aUCACgaagUCGCCUUGGUCGauuugggagaacUCGUAGuuGu -3'
miRNA:   3'- -AGUGg---AGUGGAACCGGC------------AGCAUCggC- -5'
12668 5' -56.9 NC_003345.1 + 63469 0.67 0.667209
Target:  5'- cUCACCgaacCACUcgcgGGCCuUCGUAGCgCGa -3'
miRNA:   3'- -AGUGGa---GUGGaa--CCGGcAGCAUCG-GC- -5'
12668 5' -56.9 NC_003345.1 + 65523 0.68 0.639689
Target:  5'- gUCGCUUCACCgaGGUaaucaccagcggaguCGUCGUAaCCGg -3'
miRNA:   3'- -AGUGGAGUGGaaCCG---------------GCAGCAUcGGC- -5'
12668 5' -56.9 NC_003345.1 + 50473 0.69 0.561624
Target:  5'- aUugCUCACCUg---CGUCGUGGCCu -3'
miRNA:   3'- aGugGAGUGGAaccgGCAGCAUCGGc -5'
12668 5' -56.9 NC_003345.1 + 19954 0.69 0.540893
Target:  5'- -gGCCcCACCgaGGUCGUgGUAGUCGc -3'
miRNA:   3'- agUGGaGUGGaaCCGGCAgCAUCGGC- -5'
12668 5' -56.9 NC_003345.1 + 63442 0.69 0.534723
Target:  5'- cCACuCUCGCCUcuaacacgggcacgcUGGCCGagG-GGCCGg -3'
miRNA:   3'- aGUG-GAGUGGA---------------ACCGGCagCaUCGGC- -5'
12668 5' -56.9 NC_003345.1 + 32816 0.69 0.520426
Target:  5'- aCGCCccugaAUCgucgGGCCGcCGUAGCCGg -3'
miRNA:   3'- aGUGGag---UGGaa--CCGGCaGCAUCGGC- -5'
12668 5' -56.9 NC_003345.1 + 50271 0.72 0.405448
Target:  5'- cCACCacCGCCggGGCgGUUGUAGCUGu -3'
miRNA:   3'- aGUGGa-GUGGaaCCGgCAGCAUCGGC- -5'
12668 5' -56.9 NC_003345.1 + 49813 0.72 0.369128
Target:  5'- aUCAUCUacaaucgggucaACCg-GGCCGUCGUAGCCc -3'
miRNA:   3'- -AGUGGAg-----------UGGaaCCGGCAGCAUCGGc -5'
12668 5' -56.9 NC_003345.1 + 65598 1.09 0.001152
Target:  5'- aUCACCUCACCUUGGCCGUCGUAGCCGu -3'
miRNA:   3'- -AGUGGAGUGGAACCGGCAGCAUCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.