Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12668 | 5' | -56.9 | NC_003345.1 | + | 58912 | 0.66 | 0.746833 |
Target: 5'- aUguCCUCACCacGGCauugcugucccucgCGUCGUAGCUc -3' miRNA: 3'- -AguGGAGUGGaaCCG--------------GCAGCAUCGGc -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 45370 | 0.66 | 0.729641 |
Target: 5'- cUCACCUCGCCcuugagguauagUUcgagaaGGUCGUCGUcgcGGUCGc -3' miRNA: 3'- -AGUGGAGUGG------------AA------CCGGCAGCA---UCGGC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 35173 | 0.66 | 0.719403 |
Target: 5'- --uCCUCGgCggGGCCGUCGUAcuGuCCGa -3' miRNA: 3'- aguGGAGUgGaaCCGGCAGCAU--C-GGC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 65640 | 0.67 | 0.667209 |
Target: 5'- aUCACgaagUCGCCUUGGUCGauuugggagaacUCGUAGuuGu -3' miRNA: 3'- -AGUGg---AGUGGAACCGGC------------AGCAUCggC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 63469 | 0.67 | 0.667209 |
Target: 5'- cUCACCgaacCACUcgcgGGCCuUCGUAGCgCGa -3' miRNA: 3'- -AGUGGa---GUGGaa--CCGGcAGCAUCG-GC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 65523 | 0.68 | 0.639689 |
Target: 5'- gUCGCUUCACCgaGGUaaucaccagcggaguCGUCGUAaCCGg -3' miRNA: 3'- -AGUGGAGUGGaaCCG---------------GCAGCAUcGGC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 50473 | 0.69 | 0.561624 |
Target: 5'- aUugCUCACCUg---CGUCGUGGCCu -3' miRNA: 3'- aGugGAGUGGAaccgGCAGCAUCGGc -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 19954 | 0.69 | 0.540893 |
Target: 5'- -gGCCcCACCgaGGUCGUgGUAGUCGc -3' miRNA: 3'- agUGGaGUGGaaCCGGCAgCAUCGGC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 63442 | 0.69 | 0.534723 |
Target: 5'- cCACuCUCGCCUcuaacacgggcacgcUGGCCGagG-GGCCGg -3' miRNA: 3'- aGUG-GAGUGGA---------------ACCGGCagCaUCGGC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 32816 | 0.69 | 0.520426 |
Target: 5'- aCGCCccugaAUCgucgGGCCGcCGUAGCCGg -3' miRNA: 3'- aGUGGag---UGGaa--CCGGCaGCAUCGGC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 50271 | 0.72 | 0.405448 |
Target: 5'- cCACCacCGCCggGGCgGUUGUAGCUGu -3' miRNA: 3'- aGUGGa-GUGGaaCCGgCAGCAUCGGC- -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 49813 | 0.72 | 0.369128 |
Target: 5'- aUCAUCUacaaucgggucaACCg-GGCCGUCGUAGCCc -3' miRNA: 3'- -AGUGGAg-----------UGGaaCCGGCAGCAUCGGc -5' |
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12668 | 5' | -56.9 | NC_003345.1 | + | 65598 | 1.09 | 0.001152 |
Target: 5'- aUCACCUCACCUUGGCCGUCGUAGCCGu -3' miRNA: 3'- -AGUGGAGUGGAACCGGCAGCAUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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