Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12669 | 3' | -48.9 | NC_003345.1 | + | 53950 | 0.67 | 0.964792 |
Target: 5'- gUGCCGUUCAGG-GAGUuaaGggagUCAcUUCGg -3' miRNA: 3'- aACGGCAAGUUCgCUCA---Ca---AGU-AAGC- -5' |
|||||||
12669 | 3' | -48.9 | NC_003345.1 | + | 60322 | 0.67 | 0.961016 |
Target: 5'- -cGCUGUUCAGGCGuccGGUGUUgCuaccUCGa -3' miRNA: 3'- aaCGGCAAGUUCGC---UCACAA-Gua--AGC- -5' |
|||||||
12669 | 3' | -48.9 | NC_003345.1 | + | 25759 | 0.71 | 0.825956 |
Target: 5'- -cGCCGUUCAAGUG-GUGUgUCAgacCGg -3' miRNA: 3'- aaCGGCAAGUUCGCuCACA-AGUaa-GC- -5' |
|||||||
12669 | 3' | -48.9 | NC_003345.1 | + | 65776 | 1.06 | 0.009085 |
Target: 5'- cUUGCCGUUCAAGCGAGUGUUCAUUCGc -3' miRNA: 3'- -AACGGCAAGUUCGCUCACAAGUAAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home