miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12669 5' -50.7 NC_003345.1 + 1442 0.66 0.967068
Target:  5'- aUCGAGCAUuaAUGCcucgaaGCUgUCGAaCCGGCUg -3'
miRNA:   3'- gAGCUUGUG--UAUG------CGA-AGCU-GGUCGA- -5'
12669 5' -50.7 NC_003345.1 + 61319 0.66 0.963548
Target:  5'- aCUUGAuGCugguuuCGUugGCUcagaCGACCAGCUc -3'
miRNA:   3'- -GAGCU-UGu-----GUAugCGAa---GCUGGUCGA- -5'
12669 5' -50.7 NC_003345.1 + 16194 0.66 0.955736
Target:  5'- aUCGAGcCACGga-GCUUCaacgacGACCGGCa -3'
miRNA:   3'- gAGCUU-GUGUaugCGAAG------CUGGUCGa -5'
12669 5' -50.7 NC_003345.1 + 4673 0.66 0.951434
Target:  5'- aUUGAGCAacuugugGCGCUguUCGACCgagAGCUg -3'
miRNA:   3'- gAGCUUGUgua----UGCGA--AGCUGG---UCGA- -5'
12669 5' -50.7 NC_003345.1 + 24375 0.66 0.951434
Target:  5'- -aCGAAC-CGUugGCUaCGuccACCGGCUc -3'
miRNA:   3'- gaGCUUGuGUAugCGAaGC---UGGUCGA- -5'
12669 5' -50.7 NC_003345.1 + 35242 0.68 0.919813
Target:  5'- gCUCGGACGCugAUGCacuuCUUCGACCuucGCa -3'
miRNA:   3'- -GAGCUUGUG--UAUGc---GAAGCUGGu--CGa -5'
12669 5' -50.7 NC_003345.1 + 51791 0.68 0.91356
Target:  5'- cCUCGAACACGUAgGUc-UGuCCGGCa -3'
miRNA:   3'- -GAGCUUGUGUAUgCGaaGCuGGUCGa -5'
12669 5' -50.7 NC_003345.1 + 62707 0.68 0.907028
Target:  5'- uUCGAGCGCccuCGCUUUcAUCAGCg -3'
miRNA:   3'- gAGCUUGUGuauGCGAAGcUGGUCGa -5'
12669 5' -50.7 NC_003345.1 + 42898 0.69 0.878165
Target:  5'- -cCGAACAgAcACGCUUCGaACgAGCg -3'
miRNA:   3'- gaGCUUGUgUaUGCGAAGC-UGgUCGa -5'
12669 5' -50.7 NC_003345.1 + 30199 0.69 0.870289
Target:  5'- -aUGAGucuCACcgaGUACGCaUCGACCAGCg -3'
miRNA:   3'- gaGCUU---GUG---UAUGCGaAGCUGGUCGa -5'
12669 5' -50.7 NC_003345.1 + 12551 0.71 0.798904
Target:  5'- uUCG-GCGCAUcaacuCGgUUCGACCGGCUc -3'
miRNA:   3'- gAGCuUGUGUAu----GCgAAGCUGGUCGA- -5'
12669 5' -50.7 NC_003345.1 + 76900 0.71 0.768923
Target:  5'- aUCGAccCGgAUugGC-UCGACCAGCUc -3'
miRNA:   3'- gAGCUu-GUgUAugCGaAGCUGGUCGA- -5'
12669 5' -50.7 NC_003345.1 + 9211 0.73 0.672498
Target:  5'- uUCGGACACcgGC-CUUCGACCcGCc -3'
miRNA:   3'- gAGCUUGUGuaUGcGAAGCUGGuCGa -5'
12669 5' -50.7 NC_003345.1 + 63304 0.73 0.650349
Target:  5'- aUCGGAUGCGUccuCGCUcaccggccccUCGGCCAGCg -3'
miRNA:   3'- gAGCUUGUGUAu--GCGA----------AGCUGGUCGa -5'
12669 5' -50.7 NC_003345.1 + 25338 0.74 0.594854
Target:  5'- gUCccGCAUAUACGCUUCGACCuuGCc -3'
miRNA:   3'- gAGcuUGUGUAUGCGAAGCUGGu-CGa -5'
12669 5' -50.7 NC_003345.1 + 65812 1.08 0.005303
Target:  5'- gCUCGAACACAUACGCUUCGACCAGCUc -3'
miRNA:   3'- -GAGCUUGUGUAUGCGAAGCUGGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.