miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1267 3' -52.4 NC_001317.1 + 11005 0.66 0.708462
Target:  5'- aGCGccuGGUCGucagGCCuGCUGAUGAcACCa -3'
miRNA:   3'- -UGCu--CCGGUua--UGG-CGGCUACUaUGG- -5'
1267 3' -52.4 NC_001317.1 + 14815 0.67 0.670473
Target:  5'- gGCGGuGGCguAUGCCGUggcgguggcguucgCGGUGGUAUCc -3'
miRNA:   3'- -UGCU-CCGguUAUGGCG--------------GCUACUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 1410 0.67 0.662342
Target:  5'- aGCGGugacGGUCGGUGCCuGCgGGUuGUGCCg -3'
miRNA:   3'- -UGCU----CCGGUUAUGG-CGgCUAcUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 17814 0.67 0.650701
Target:  5'- uUGAGGCggcuuccauCAGUACCGCCGccgccGAgcugGCCu -3'
miRNA:   3'- uGCUCCG---------GUUAUGGCGGCua---CUa---UGG- -5'
1267 3' -52.4 NC_001317.1 + 16643 0.67 0.63904
Target:  5'- cGCGAGGCCGGUGa-GCUGGccGUGCa -3'
miRNA:   3'- -UGCUCCGGUUAUggCGGCUacUAUGg -5'
1267 3' -52.4 NC_001317.1 + 9314 0.68 0.61571
Target:  5'- -aGccGCCAuuuugcgacGUGCCGCCGGUGAcagGCUg -3'
miRNA:   3'- ugCucCGGU---------UAUGGCGGCUACUa--UGG- -5'
1267 3' -52.4 NC_001317.1 + 19100 0.68 0.604063
Target:  5'- gUGAGauCCA--GCCGCCGGUGAUGgCu -3'
miRNA:   3'- uGCUCc-GGUuaUGGCGGCUACUAUgG- -5'
1267 3' -52.4 NC_001317.1 + 9791 0.68 0.569327
Target:  5'- -gGAGGUCGAUACCGUgcaGggGcuGUGCCg -3'
miRNA:   3'- ugCUCCGGUUAUGGCGg--CuaC--UAUGG- -5'
1267 3' -52.4 NC_001317.1 + 15571 0.7 0.501636
Target:  5'- gGCGcuguGGGCgCAGUAUgccgCGCCGGgggcUGAUGCCg -3'
miRNA:   3'- -UGC----UCCG-GUUAUG----GCGGCU----ACUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 14090 0.7 0.476611
Target:  5'- aGCG-GGCaAAUGCCGCCGGguuauucagguuuuUGcgGCCa -3'
miRNA:   3'- -UGCuCCGgUUAUGGCGGCU--------------ACuaUGG- -5'
1267 3' -52.4 NC_001317.1 + 2293 0.7 0.448048
Target:  5'- cCGAGGCCGGUugCGUCa---AUGCCg -3'
miRNA:   3'- uGCUCCGGUUAugGCGGcuacUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 16998 0.7 0.448048
Target:  5'- uGCGGGGUCGGUAUCGCgacacggaaCGAUG--GCCg -3'
miRNA:   3'- -UGCUCCGGUUAUGGCG---------GCUACuaUGG- -5'
1267 3' -52.4 NC_001317.1 + 16134 0.71 0.427513
Target:  5'- cCGAGGUCGAUG-CGCUGAUuaaGGUGCUg -3'
miRNA:   3'- uGCUCCGGUUAUgGCGGCUA---CUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 14660 0.71 0.397785
Target:  5'- cACGAGGCUGAUACaGaCCGAUGcaaGUGCg -3'
miRNA:   3'- -UGCUCCGGUUAUGgC-GGCUAC---UAUGg -5'
1267 3' -52.4 NC_001317.1 + 20187 0.72 0.388174
Target:  5'- cGCGAGGgUGAguaUAUgGCCGGUGAgGCCg -3'
miRNA:   3'- -UGCUCCgGUU---AUGgCGGCUACUaUGG- -5'
1267 3' -52.4 NC_001317.1 + 5100 0.73 0.325301
Target:  5'- cCGAGGUguCGgucGUGCUGgCGAUGGUGCCg -3'
miRNA:   3'- uGCUCCG--GU---UAUGGCgGCUACUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 18085 0.74 0.285222
Target:  5'- -aGAGcGCC---ACCGgCGAUGAUGCCa -3'
miRNA:   3'- ugCUC-CGGuuaUGGCgGCUACUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 2117 0.75 0.263102
Target:  5'- uACGAGGCCA--GCCGCacCGAgGAaGCCa -3'
miRNA:   3'- -UGCUCCGGUuaUGGCG--GCUaCUaUGG- -5'
1267 3' -52.4 NC_001317.1 + 23937 0.78 0.167897
Target:  5'- aACGAuGcGCCAAUACCGCUcAUGGUAUCg -3'
miRNA:   3'- -UGCU-C-CGGUUAUGGCGGcUACUAUGG- -5'
1267 3' -52.4 NC_001317.1 + 5803 0.8 0.107934
Target:  5'- uCGAGGCguAUGCCGCCG--GGUGCCu -3'
miRNA:   3'- uGCUCCGguUAUGGCGGCuaCUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.