miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12670 5' -49.4 NC_003345.1 + 51722 0.66 0.978738
Target:  5'- cGugGAUaaUGUCCAcaccggaGCGAGAGAGUa- -3'
miRNA:   3'- cUugCUGa-ACAGGU-------UGCUCUCUCAca -5'
12670 5' -49.4 NC_003345.1 + 74965 0.67 0.959911
Target:  5'- aGAAuCGACg---CCAGCGGGAGAGa-- -3'
miRNA:   3'- -CUU-GCUGaacaGGUUGCUCUCUCaca -5'
12670 5' -49.4 NC_003345.1 + 44671 0.71 0.852694
Target:  5'- gGAGCGACag--UCAGCGGGAGAGUa- -3'
miRNA:   3'- -CUUGCUGaacaGGUUGCUCUCUCAca -5'
12670 5' -49.4 NC_003345.1 + 62791 0.72 0.810721
Target:  5'- cGAGCGACUUGaCgGACGAGAGGcgcuuguugauuggcGUGg -3'
miRNA:   3'- -CUUGCUGAACaGgUUGCUCUCU---------------CACa -5'
12670 5' -49.4 NC_003345.1 + 38044 0.73 0.745731
Target:  5'- cGAGCuGGCUgaguccgaggUGUCCGACGAGAuguGGGUGg -3'
miRNA:   3'- -CUUG-CUGA----------ACAGGUUGCUCU---CUCACa -5'
12670 5' -49.4 NC_003345.1 + 65895 1.09 0.00599
Target:  5'- cGAACGACUUGUCCAACGAGAGAGUGUa -3'
miRNA:   3'- -CUUGCUGAACAGGUUGCUCUCUCACA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.