Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12671 | 3' | -53.4 | NC_003345.1 | + | 20413 | 0.66 | 0.881585 |
Target: 5'- uGGAGUguUGAUGGGGuUCACGacgugguucgGCUCCGc -3' miRNA: 3'- gCCUCA--GCUACUCUcAGUGC----------UGAGGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 46085 | 0.66 | 0.881585 |
Target: 5'- aGcGAGcCGGUGAGAGgccCACGuccccCUCCGg -3' miRNA: 3'- gC-CUCaGCUACUCUCa--GUGCu----GAGGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 4614 | 0.66 | 0.902695 |
Target: 5'- cCGGAGUCGGUG-GAGguaau-CUCCGa -3' miRNA: 3'- -GCCUCAGCUACuCUCagugcuGAGGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 66875 | 0.67 | 0.866272 |
Target: 5'- uGGAGUCG-UGAcucUCAuCGACUCCGa -3' miRNA: 3'- gCCUCAGCuACUcucAGU-GCUGAGGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 54081 | 0.67 | 0.832894 |
Target: 5'- uGGAaUCGA-GAGuGUCACGAaUCCGa -3' miRNA: 3'- gCCUcAGCUaCUCuCAGUGCUgAGGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 56557 | 0.68 | 0.805701 |
Target: 5'- uCGGAGcUUGGUGGagcuucGAGUCACGACcagCUAa -3' miRNA: 3'- -GCCUC-AGCUACU------CUCAGUGCUGa--GGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 23259 | 0.68 | 0.82402 |
Target: 5'- gGGAGU-GAUuagGAGAGUCGcCGuCUCCGc -3' miRNA: 3'- gCCUCAgCUA---CUCUCAGU-GCuGAGGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 65082 | 0.69 | 0.75702 |
Target: 5'- uCGGGGUCGAUGAuaauGUCGUGACccuccUCCAa -3' miRNA: 3'- -GCCUCAGCUACUcu--CAGUGCUG-----AGGU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 8273 | 0.7 | 0.673314 |
Target: 5'- gGGAGUCGGUGGGAGguaAgGugUUCu -3' miRNA: 3'- gCCUCAGCUACUCUCag-UgCugAGGu -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 65490 | 0.72 | 0.560491 |
Target: 5'- cCGGAGUCGGagauuccUGAGAGUCugacaacggacuuCGACUCgGa -3' miRNA: 3'- -GCCUCAGCU-------ACUCUCAGu------------GCUGAGgU- -5' |
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12671 | 3' | -53.4 | NC_003345.1 | + | 66773 | 1.09 | 0.002648 |
Target: 5'- uCGGAGUCGAUGAGAGUCACGACUCCAa -3' miRNA: 3'- -GCCUCAGCUACUCUCAGUGCUGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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