miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12671 5' -50.5 NC_003345.1 + 22144 0.66 0.973052
Target:  5'- gUGUGGGCCGUAgcuggCUCgUACuGAccGAGUu -3'
miRNA:   3'- -ACAUCUGGCAUa----GAGgGUGcCU--UUCG- -5'
12671 5' -50.5 NC_003345.1 + 29909 0.66 0.970006
Target:  5'- aGUAgacGACCGaggcgGUCgcCCCACGGuaucGGGCg -3'
miRNA:   3'- aCAU---CUGGCa----UAGa-GGGUGCCu---UUCG- -5'
12671 5' -50.5 NC_003345.1 + 46155 0.66 0.966722
Target:  5'- cGUGGGgCGU-UCUCCUACuGGGAcaAGUc -3'
miRNA:   3'- aCAUCUgGCAuAGAGGGUG-CCUU--UCG- -5'
12671 5' -50.5 NC_003345.1 + 14667 0.66 0.962826
Target:  5'- cGUGGAgCGUGucgugcuUCUCCgCgACGGcAAGCc -3'
miRNA:   3'- aCAUCUgGCAU-------AGAGG-G-UGCCuUUCG- -5'
12671 5' -50.5 NC_003345.1 + 52378 0.66 0.959409
Target:  5'- -----uCUGUucGUCUCUgACGGAGAGCg -3'
miRNA:   3'- acaucuGGCA--UAGAGGgUGCCUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 14880 0.67 0.941635
Target:  5'- --aAGuCCGUGaUUUCCACGGAcaccaGAGCa -3'
miRNA:   3'- acaUCuGGCAUaGAGGGUGCCU-----UUCG- -5'
12671 5' -50.5 NC_003345.1 + 45566 0.67 0.941635
Target:  5'- cGUGuACCGUGacggCUCCCGCGaccAGCa -3'
miRNA:   3'- aCAUcUGGCAUa---GAGGGUGCcuuUCG- -5'
12671 5' -50.5 NC_003345.1 + 10813 0.68 0.93055
Target:  5'- cUGUaaGGACUGcuccCUCCCcgacgagACGGAGGGCg -3'
miRNA:   3'- -ACA--UCUGGCaua-GAGGG-------UGCCUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 22407 0.68 0.91322
Target:  5'- --cAGACCGUGUucCUCUCgugguucaACGGAGGGUu -3'
miRNA:   3'- acaUCUGGCAUA--GAGGG--------UGCCUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 6541 0.69 0.89991
Target:  5'- aGUuacuGACCGUGgaaCCUACGGAgccgAGGCg -3'
miRNA:   3'- aCAu---CUGGCAUagaGGGUGCCU----UUCG- -5'
12671 5' -50.5 NC_003345.1 + 25774 0.69 0.892846
Target:  5'- gUGUcAGACCGg--CaaCCACGGAGAGa -3'
miRNA:   3'- -ACA-UCUGGCauaGagGGUGCCUUUCg -5'
12671 5' -50.5 NC_003345.1 + 16457 0.69 0.885515
Target:  5'- cGUAGAgcaaCCGgg-CUaCUACGGGAAGCa -3'
miRNA:   3'- aCAUCU----GGCauaGAgGGUGCCUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 76207 0.69 0.884018
Target:  5'- aGUAGGCCGUGUCgaagggaaUCCCcuucucggcuuuCGGAGucuGCu -3'
miRNA:   3'- aCAUCUGGCAUAG--------AGGGu-----------GCCUUu--CG- -5'
12671 5' -50.5 NC_003345.1 + 24929 0.7 0.83626
Target:  5'- uUGaAGACCuaAUCUCCCGCuaGAAGGCc -3'
miRNA:   3'- -ACaUCUGGcaUAGAGGGUGc-CUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 73016 0.71 0.798985
Target:  5'- cGUGGAUauucucUCUCUCACGGAcGGCa -3'
miRNA:   3'- aCAUCUGgcau--AGAGGGUGCCUuUCG- -5'
12671 5' -50.5 NC_003345.1 + 58047 0.71 0.7892
Target:  5'- -cUGGACUucaagcagGUGUCUCCUugGG-AGGCa -3'
miRNA:   3'- acAUCUGG--------CAUAGAGGGugCCuUUCG- -5'
12671 5' -50.5 NC_003345.1 + 51939 0.71 0.779249
Target:  5'- aUGUucGCCGUGUCUUCCGacacCGaGAAGGCg -3'
miRNA:   3'- -ACAucUGGCAUAGAGGGU----GC-CUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 23887 0.74 0.640069
Target:  5'- cGUgGGGCCGgacgCU-CCACGGAGGGCa -3'
miRNA:   3'- aCA-UCUGGCaua-GAgGGUGCCUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 38330 0.77 0.488645
Target:  5'- uUGUAGAgCCGaaucuUCUCCCAaucCGGGGAGCc -3'
miRNA:   3'- -ACAUCU-GGCau---AGAGGGU---GCCUUUCG- -5'
12671 5' -50.5 NC_003345.1 + 63408 0.79 0.391334
Target:  5'- cGUAGACCGgguaagCUCCCucCGaGAGAGCa -3'
miRNA:   3'- aCAUCUGGCaua---GAGGGu-GC-CUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.