miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12672 5' -57.9 NC_003345.1 + 46226 0.66 0.699747
Target:  5'- aGGUCGCGCgguGCGUCaugcgauaCAUCgaccggaggGGGACg -3'
miRNA:   3'- gCCAGCGCG---UGCAGgag-----GUAG---------UCCUG- -5'
12672 5' -57.9 NC_003345.1 + 12905 0.66 0.678985
Target:  5'- uGGUCGauagaauCACGUCCgUUCAggaaCAGGACg -3'
miRNA:   3'- gCCAGCgc-----GUGCAGG-AGGUa---GUCCUG- -5'
12672 5' -57.9 NC_003345.1 + 30959 0.67 0.637048
Target:  5'- gCGGaaG-GCcCGUCCUCCcucUCGGGACg -3'
miRNA:   3'- -GCCagCgCGuGCAGGAGGu--AGUCCUG- -5'
12672 5' -57.9 NC_003345.1 + 8308 0.67 0.637048
Target:  5'- gGGUCGUcuucGUugGaagCCUCgaaGUCGGGACg -3'
miRNA:   3'- gCCAGCG----CGugCa--GGAGg--UAGUCCUG- -5'
12672 5' -57.9 NC_003345.1 + 24569 0.68 0.574179
Target:  5'- aGGa-GCGguCGUCCUCgGcggCAGGACg -3'
miRNA:   3'- gCCagCGCguGCAGGAGgUa--GUCCUG- -5'
12672 5' -57.9 NC_003345.1 + 45487 0.68 0.547324
Target:  5'- aCGGUcaggcccuugauaacCGCGcCACGUcggCCUUCAUCgAGGGCa -3'
miRNA:   3'- -GCCA---------------GCGC-GUGCA---GGAGGUAG-UCCUG- -5'
12672 5' -57.9 NC_003345.1 + 40910 0.69 0.492978
Target:  5'- uCGGUaaaGCGCGUCCUUgGUaAGGACg -3'
miRNA:   3'- -GCCAgcgCGUGCAGGAGgUAgUCCUG- -5'
12672 5' -57.9 NC_003345.1 + 29351 0.7 0.454367
Target:  5'- -cGUCGCcCACGUCuCUCCGucgugguggUCGGGGCu -3'
miRNA:   3'- gcCAGCGcGUGCAG-GAGGU---------AGUCCUG- -5'
12672 5' -57.9 NC_003345.1 + 12523 0.71 0.382427
Target:  5'- uGGUCgaagucuuugGCGU-UGUCCUCCGUCAGcGACu -3'
miRNA:   3'- gCCAG----------CGCGuGCAGGAGGUAGUC-CUG- -5'
12672 5' -57.9 NC_003345.1 + 37878 0.71 0.373981
Target:  5'- cCGGUCGCGCACcUCCUUguUCAccgcacGGAa -3'
miRNA:   3'- -GCCAGCGCGUGcAGGAGguAGU------CCUg -5'
12672 5' -57.9 NC_003345.1 + 73088 0.72 0.333683
Target:  5'- aCGGUCGCcauagcgaGguCGUCCUucCCAUCGGGGg -3'
miRNA:   3'- -GCCAGCG--------CguGCAGGA--GGUAGUCCUg -5'
12672 5' -57.9 NC_003345.1 + 46386 0.76 0.184886
Target:  5'- aGGUCGcCGCuggcuACGUCCUCCAgcuugucgcUCAGGAa -3'
miRNA:   3'- gCCAGC-GCG-----UGCAGGAGGU---------AGUCCUg -5'
12672 5' -57.9 NC_003345.1 + 69675 1.1 0.000797
Target:  5'- gCGGUCGCGCACGUCCUCCAUCAGGACg -3'
miRNA:   3'- -GCCAGCGCGUGCAGGAGGUAGUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.