miRNA: 3'- -CCUCU----------CGCC-GAAGCcCCAGC----UCUCAA- -5'
miRNA: 3'- cCUCUCGcCGAAGCcCCAGC--UCUCaa -5'
miRNA: 3'- -CCUCUcgCCGAAGCCC--CAGCUCUcaa -5'
miRNA: 3'- -CCUC-----UCGCCGA---AGCCCCa---GCUcUCAa -5'
miRNA: 3'- -CCUCUCGCCGAAGCCCCAGCUCUCAA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12673 | 5' | -57.7 | NC_003345.1 | + | 21623 | 0.66 | 0.700518 |
|
Target: 5'- aGGAGAggaugacacgGCGGcCUUCGaGGUCGucacGGAGUUc -3' miRNA: 3'- -CCUCU----------CGCC-GAAGCcCCAGC----UCUCAA- -5' |
|||||||
| 12673 | 5' | -57.7 | NC_003345.1 | + | 20461 | 0.66 | 0.690087 |
|
Target: 5'- cGAGAGUcGCUUCGaGGUCGccGGAGg- -3' miRNA: 3'- cCUCUCGcCGAAGCcCCAGC--UCUCaa -5' |
|||||||
| 12673 | 5' | -57.7 | NC_003345.1 | + | 8215 | 0.66 | 0.658521 |
|
Target: 5'- uGGAGA--GGCUUCGGGucGUCGGGGu-- -3' miRNA: 3'- -CCUCUcgCCGAAGCCC--CAGCUCUcaa -5' |
|||||||
| 12673 | 5' | -57.7 | NC_003345.1 | + | 50344 | 0.67 | 0.605576 |
|
Target: 5'- uGGAGgugcuGGCGGCUccuUCGGGGgucgCGGuGGUa -3' miRNA: 3'- -CCUC-----UCGCCGA---AGCCCCa---GCUcUCAa -5' |
|||||||
| 12673 | 5' | -57.7 | NC_003345.1 | + | 69805 | 1.06 | 0.001343 |
|
Target: 5'- gGGAGAGCGGCUUCGGGGUCGAGAGUUu -3' miRNA: 3'- -CCUCUCGCCGAAGCCCCAGCUCUCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home