miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12674 3' -52.2 NC_003345.1 + 69321 0.66 0.907753
Target:  5'- cGAGGCUgaGCGCccgUUCCGCGAccuguucGUGGAGc -3'
miRNA:   3'- -CUUCGAg-UGCG---AAGGCGCUc------UAUCUC- -5'
12674 3' -52.2 NC_003345.1 + 69468 0.66 0.907091
Target:  5'- gGGAGCagucugcgUCACGCcgCCGCccggagcGAGAUAGAc -3'
miRNA:   3'- -CUUCG--------AGUGCGaaGGCG-------CUCUAUCUc -5'
12674 3' -52.2 NC_003345.1 + 51888 0.67 0.896832
Target:  5'- -cAGCUCACGUUUCCGUucucgucgucaagccGGauGAUAGAc -3'
miRNA:   3'- cuUCGAGUGCGAAGGCG---------------CU--CUAUCUc -5'
12674 3' -52.2 NC_003345.1 + 43007 0.68 0.810184
Target:  5'- -cAGCUCACGCUcguUCCgaaGCGugucuguucgguAGAUGGGGa -3'
miRNA:   3'- cuUCGAGUGCGA---AGG---CGC------------UCUAUCUC- -5'
12674 3' -52.2 NC_003345.1 + 72899 0.71 0.663018
Target:  5'- -uAGC-CGCGCUucugccgUCCGUGAGAgAGAGa -3'
miRNA:   3'- cuUCGaGUGCGA-------AGGCGCUCUaUCUC- -5'
12674 3' -52.2 NC_003345.1 + 2446 0.73 0.572648
Target:  5'- -uAGCUCACGCUggaacucaucggcuUCCGCGAGGg---- -3'
miRNA:   3'- cuUCGAGUGCGA--------------AGGCGCUCUaucuc -5'
12674 3' -52.2 NC_003345.1 + 46818 0.77 0.349327
Target:  5'- cGAGCgagUCACGC-UCCGCGAGAagugGGAGg -3'
miRNA:   3'- cUUCG---AGUGCGaAGGCGCUCUa---UCUC- -5'
12674 3' -52.2 NC_003345.1 + 70076 1.1 0.002593
Target:  5'- aGAAGCUCACGCUUCCGCGAGAUAGAGa -3'
miRNA:   3'- -CUUCGAGUGCGAAGGCGCUCUAUCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.