Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12674 | 5' | -58.1 | NC_003345.1 | + | 43125 | 0.68 | 0.550453 |
Target: 5'- -cUUCGUCUUCAUCGAccuccacgGGGaGCGGGACa -3' miRNA: 3'- ucGAGCAGGAGUGGCU--------CUC-CGCUCUG- -5' |
|||||||
12674 | 5' | -58.1 | NC_003345.1 | + | 19289 | 0.68 | 0.509693 |
Target: 5'- aAGCUCGUgCCcaaAUCGAGAaggcgcguGGUGAGGCg -3' miRNA: 3'- -UCGAGCA-GGag-UGGCUCU--------CCGCUCUG- -5' |
|||||||
12674 | 5' | -58.1 | NC_003345.1 | + | 22792 | 0.69 | 0.499696 |
Target: 5'- cGGUUUGaCCgccgUACCGAGAGcGCGGGAg -3' miRNA: 3'- -UCGAGCaGGa---GUGGCUCUC-CGCUCUg -5' |
|||||||
12674 | 5' | -58.1 | NC_003345.1 | + | 18580 | 0.69 | 0.45112 |
Target: 5'- gAGCUaCGUCCccaaaaacCACCGcGAGGCGGuGGCu -3' miRNA: 3'- -UCGA-GCAGGa-------GUGGCuCUCCGCU-CUG- -5' |
|||||||
12674 | 5' | -58.1 | NC_003345.1 | + | 20771 | 0.69 | 0.45112 |
Target: 5'- cGCUUGUCCUCACUcuauuAGAcGUGGGACu -3' miRNA: 3'- uCGAGCAGGAGUGGc----UCUcCGCUCUG- -5' |
|||||||
12674 | 5' | -58.1 | NC_003345.1 | + | 23781 | 0.74 | 0.259952 |
Target: 5'- cGCUCGgaugaacgagCUUCACCGAGAGGUGcGAa -3' miRNA: 3'- uCGAGCa---------GGAGUGGCUCUCCGCuCUg -5' |
|||||||
12674 | 5' | -58.1 | NC_003345.1 | + | 70111 | 1.09 | 0.000833 |
Target: 5'- cAGCUCGUCCUCACCGAGAGGCGAGACu -3' miRNA: 3'- -UCGAGCAGGAGUGGCUCUCCGCUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home