miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12676 5' -57.1 NC_003345.1 + 75788 0.66 0.739789
Target:  5'- gAAGGuucCCGuuCUCGUCGUACaCUUCCu -3'
miRNA:   3'- gUUCC---GGUggGAGUAGCAUG-GGAGGc -5'
12676 5' -57.1 NC_003345.1 + 51172 0.66 0.729641
Target:  5'- uCGAGGUCGCCaCUCAUCGagucGCCUgucUCGu -3'
miRNA:   3'- -GUUCCGGUGG-GAGUAGCa---UGGGa--GGC- -5'
12676 5' -57.1 NC_003345.1 + 43890 0.66 0.709084
Target:  5'- gAAGGCCcacuAUCCUCAUCcacGUuCCCUuuGa -3'
miRNA:   3'- gUUCCGG----UGGGAGUAG---CAuGGGAggC- -5'
12676 5' -57.1 NC_003345.1 + 21453 0.67 0.656639
Target:  5'- cCGAGGCuCACCgg-GUCGUcGCCCUCaCGg -3'
miRNA:   3'- -GUUCCG-GUGGgagUAGCA-UGGGAG-GC- -5'
12676 5' -57.1 NC_003345.1 + 68825 0.67 0.646049
Target:  5'- gAAGGUCGCCCUCAuguccaUCG-ACCugaagcgcaagCUCCGc -3'
miRNA:   3'- gUUCCGGUGGGAGU------AGCaUGG-----------GAGGC- -5'
12676 5' -57.1 NC_003345.1 + 45412 0.67 0.635447
Target:  5'- --cGGUCGCCCUCGUCGU-CCagauuguugUCCa -3'
miRNA:   3'- guuCCGGUGGGAGUAGCAuGGg--------AGGc -5'
12676 5' -57.1 NC_003345.1 + 65027 0.67 0.635447
Target:  5'- ---aGUCGCCCUCGccagCGUAUCCUCgGg -3'
miRNA:   3'- guucCGGUGGGAGUa---GCAUGGGAGgC- -5'
12676 5' -57.1 NC_003345.1 + 65950 0.67 0.635447
Target:  5'- -cGGGUCGCCUUCGUaGU-CCaCUCCGa -3'
miRNA:   3'- guUCCGGUGGGAGUAgCAuGG-GAGGC- -5'
12676 5' -57.1 NC_003345.1 + 67250 0.67 0.624841
Target:  5'- gAGGGCCACCgUCAgCGUAUUUcgCCGc -3'
miRNA:   3'- gUUCCGGUGGgAGUaGCAUGGGa-GGC- -5'
12676 5' -57.1 NC_003345.1 + 3306 0.67 0.624841
Target:  5'- gUAAGGCCggaGCCUUCGUau--UCCUCCGg -3'
miRNA:   3'- -GUUCCGG---UGGGAGUAgcauGGGAGGC- -5'
12676 5' -57.1 NC_003345.1 + 74166 0.68 0.593096
Target:  5'- -cGGGCgACCCggacuccgcUCGUgGUgaagACCCUCCGa -3'
miRNA:   3'- guUCCGgUGGG---------AGUAgCA----UGGGAGGC- -5'
12676 5' -57.1 NC_003345.1 + 74088 0.74 0.30053
Target:  5'- aGAGcGCCACCCUCGaugCGUACCUaCCc -3'
miRNA:   3'- gUUC-CGGUGGGAGUa--GCAUGGGaGGc -5'
12676 5' -57.1 NC_003345.1 + 32180 0.74 0.293389
Target:  5'- aCGAGGCCGgUCUUGucggugucuUCGUACCCUUCGa -3'
miRNA:   3'- -GUUCCGGUgGGAGU---------AGCAUGGGAGGC- -5'
12676 5' -57.1 NC_003345.1 + 57889 0.75 0.259669
Target:  5'- cCGGGGCCACCCaCGUUGUGa-CUCCGa -3'
miRNA:   3'- -GUUCCGGUGGGaGUAGCAUggGAGGC- -5'
12676 5' -57.1 NC_003345.1 + 70493 1.09 0.001026
Target:  5'- cCAAGGCCACCCUCAUCGUACCCUCCGg -3'
miRNA:   3'- -GUUCCGGUGGGAGUAGCAUGGGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.