Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12676 | 5' | -57.1 | NC_003345.1 | + | 32180 | 0.74 | 0.293389 |
Target: 5'- aCGAGGCCGgUCUUGucggugucuUCGUACCCUUCGa -3' miRNA: 3'- -GUUCCGGUgGGAGU---------AGCAUGGGAGGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 74088 | 0.74 | 0.30053 |
Target: 5'- aGAGcGCCACCCUCGaugCGUACCUaCCc -3' miRNA: 3'- gUUC-CGGUGGGAGUa--GCAUGGGaGGc -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 74166 | 0.68 | 0.593096 |
Target: 5'- -cGGGCgACCCggacuccgcUCGUgGUgaagACCCUCCGa -3' miRNA: 3'- guUCCGgUGGG---------AGUAgCA----UGGGAGGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 3306 | 0.67 | 0.624841 |
Target: 5'- gUAAGGCCggaGCCUUCGUau--UCCUCCGg -3' miRNA: 3'- -GUUCCGG---UGGGAGUAgcauGGGAGGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 68825 | 0.67 | 0.646049 |
Target: 5'- gAAGGUCGCCCUCAuguccaUCG-ACCugaagcgcaagCUCCGc -3' miRNA: 3'- gUUCCGGUGGGAGU------AGCaUGG-----------GAGGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 21453 | 0.67 | 0.656639 |
Target: 5'- cCGAGGCuCACCgg-GUCGUcGCCCUCaCGg -3' miRNA: 3'- -GUUCCG-GUGGgagUAGCA-UGGGAG-GC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 43890 | 0.66 | 0.709084 |
Target: 5'- gAAGGCCcacuAUCCUCAUCcacGUuCCCUuuGa -3' miRNA: 3'- gUUCCGG----UGGGAGUAG---CAuGGGAggC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 75788 | 0.66 | 0.739789 |
Target: 5'- gAAGGuucCCGuuCUCGUCGUACaCUUCCu -3' miRNA: 3'- gUUCC---GGUggGAGUAGCAUG-GGAGGc -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 51172 | 0.66 | 0.729641 |
Target: 5'- uCGAGGUCGCCaCUCAUCGagucGCCUgucUCGu -3' miRNA: 3'- -GUUCCGGUGG-GAGUAGCa---UGGGa--GGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 65950 | 0.67 | 0.635447 |
Target: 5'- -cGGGUCGCCUUCGUaGU-CCaCUCCGa -3' miRNA: 3'- guUCCGGUGGGAGUAgCAuGG-GAGGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 65027 | 0.67 | 0.635447 |
Target: 5'- ---aGUCGCCCUCGccagCGUAUCCUCgGg -3' miRNA: 3'- guucCGGUGGGAGUa---GCAUGGGAGgC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 45412 | 0.67 | 0.635447 |
Target: 5'- --cGGUCGCCCUCGUCGU-CCagauuguugUCCa -3' miRNA: 3'- guuCCGGUGGGAGUAGCAuGGg--------AGGc -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 67250 | 0.67 | 0.624841 |
Target: 5'- gAGGGCCACCgUCAgCGUAUUUcgCCGc -3' miRNA: 3'- gUUCCGGUGGgAGUaGCAUGGGa-GGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 57889 | 0.75 | 0.259669 |
Target: 5'- cCGGGGCCACCCaCGUUGUGa-CUCCGa -3' miRNA: 3'- -GUUCCGGUGGGaGUAGCAUggGAGGC- -5' |
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12676 | 5' | -57.1 | NC_003345.1 | + | 70493 | 1.09 | 0.001026 |
Target: 5'- cCAAGGCCACCCUCAUCGUACCCUCCGg -3' miRNA: 3'- -GUUCCGGUGGGAGUAGCAUGGGAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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