Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12677 | 5' | -58.5 | NC_003345.1 | + | 56093 | 0.66 | 0.649782 |
Target: 5'- gUCGUCgGugguGGGGGCGGagGuGGUGGCUc -3' miRNA: 3'- -AGCAGgU----CUCCCGCCagCcUCACUGG- -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 6865 | 0.66 | 0.680801 |
Target: 5'- cUGcCCGGAGuGUGGUCGGGgaggucGUGACa -3' miRNA: 3'- aGCaGGUCUCcCGCCAGCCU------CACUGg -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 29065 | 0.66 | 0.691071 |
Target: 5'- gUCGUCguGGGGGaagaaGGgCGGAGaaGGCUa -3' miRNA: 3'- -AGCAGguCUCCCg----CCaGCCUCa-CUGG- -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 52739 | 0.66 | 0.660148 |
Target: 5'- cCGaCCggAGAGGGCGGgaaaaaGGAG-GACUu -3' miRNA: 3'- aGCaGG--UCUCCCGCCag----CCUCaCUGG- -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 2122 | 0.68 | 0.546659 |
Target: 5'- -aGUCUgugaAGaAGGGCGG-CGaGAGUGACa -3' miRNA: 3'- agCAGG----UC-UCCCGCCaGC-CUCACUGg -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 37845 | 0.68 | 0.567023 |
Target: 5'- gUCGUCUaugucGGAGGGCuGGUCGGcuuucGACa -3' miRNA: 3'- -AGCAGG-----UCUCCCG-CCAGCCuca--CUGg -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 54262 | 0.68 | 0.556814 |
Target: 5'- aCGuUCCAGcGGGGaCGGagguucagacUCGGAGcGACCc -3' miRNA: 3'- aGC-AGGUC-UCCC-GCC----------AGCCUCaCUGG- -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 55711 | 0.68 | 0.546659 |
Target: 5'- cUCGUCCGGcGGuGGUGGggCGG-GUGAaCCc -3' miRNA: 3'- -AGCAGGUC-UC-CCGCCa-GCCuCACU-GG- -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 329 | 0.7 | 0.458598 |
Target: 5'- aCGggCAGGGGGCGGggGGAGaGACg -3' miRNA: 3'- aGCagGUCUCCCGCCagCCUCaCUGg -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 77616 | 0.7 | 0.458598 |
Target: 5'- aCGggCAGGGGGCGGggGGAGaGACg -3' miRNA: 3'- aGCagGUCUCCCGCCagCCUCaCUGg -5' |
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12677 | 5' | -58.5 | NC_003345.1 | + | 70762 | 1.12 | 0.000543 |
Target: 5'- cUCGUCCAGAGGGCGGUCGGAGUGACCg -3' miRNA: 3'- -AGCAGGUCUCCCGCCAGCCUCACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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