miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12679	3'	-55.9	NC_003345.1	+	55728	0.66	0.798835
	Target:  5'- cGGCCGAaucaaCGAuacUCGUCcggcgguGGUGGGGc -3' miRNA:   3'- uCUGGCUg----GCUuu-AGCAG-------CCACCCCa -5'
12679	3'	-55.9	NC_003345.1	+	31109	0.67	0.731403
	Target:  5'- --cCCGACCGggGaacggauguUCGUCGucGGGGUg -3' miRNA:   3'- ucuGGCUGGCuuU---------AGCAGCcaCCCCA- -5'
12679	3'	-55.9	NC_003345.1	+	21334	0.69	0.626749
	Target:  5'- cGGAgCG-CCGuuGUCGUCGGUGGcGa -3' miRNA:   3'- -UCUgGCuGGCuuUAGCAGCCACCcCa -5'
12679	3'	-55.9	NC_003345.1	+	6896	0.69	0.605576
	Target:  5'- cGACCGGaaGggGUUGUCGucagaagcGUGGGGc -3' miRNA:   3'- uCUGGCUggCuuUAGCAGC--------CACCCCa -5'
12679	3'	-55.9	NC_003345.1	+	70608	0.69	0.593962
	Target:  5'- cGAacCCGACCGAGccAUCGgucauagUCGGcGGGGUg -3' miRNA:   3'- uCU--GGCUGGCUU--UAGC-------AGCCaCCCCA- -5'
12679	3'	-55.9	NC_003345.1	+	71037	0.7	0.542806
	Target:  5'- cGGCUucgGGCUGucGUCGUcCGGUGGGGa -3' miRNA:   3'- uCUGG---CUGGCuuUAGCA-GCCACCCCa -5'
12679	3'	-55.9	NC_003345.1	+	46335	0.72	0.425293
	Target:  5'- gAGAUU-ACCGAGcgCGUCGGUGGGa- -3' miRNA:   3'- -UCUGGcUGGCUUuaGCAGCCACCCca -5'
12679	3'	-55.9	NC_003345.1	+	72230	1.07	0.002255
	Target:  5'- aAGACCGACCGAAAUCGUCGGUGGGGUc -3' miRNA:   3'- -UCUGGCUGGCUUUAGCAGCCACCCCA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home