Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12679 | 5' | -57.8 | NC_003345.1 | + | 63386 | 0.66 | 0.714068 |
Target: 5'- uCCACGAggucaaCCGCGACCgCGUagacCGGGUa -3' miRNA: 3'- -GGUGUUga----GGCGCUGGaGCAc---GCCCA- -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 67593 | 0.66 | 0.69358 |
Target: 5'- aCCGCGuuaUCCGCGACaugaaGCGGGa -3' miRNA: 3'- -GGUGUug-AGGCGCUGgagcaCGCCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 11008 | 0.66 | 0.69358 |
Target: 5'- -gACGA--CCGCGACCUCGUGauuguggacgaGGGa -3' miRNA: 3'- ggUGUUgaGGCGCUGGAGCACg----------CCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 40602 | 0.66 | 0.672878 |
Target: 5'- cCCcCcACUCUGUGuucCCgcgCGUGCGGGg -3' miRNA: 3'- -GGuGuUGAGGCGCu--GGa--GCACGCCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 30623 | 0.67 | 0.652037 |
Target: 5'- aCCGauuuggaGGCgucCCGUGGCC-CGUGUGGGa -3' miRNA: 3'- -GGUg------UUGa--GGCGCUGGaGCACGCCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 38675 | 0.67 | 0.652037 |
Target: 5'- -----uUUCCGCGACCUCGgcagaGCaGGGUu -3' miRNA: 3'- gguguuGAGGCGCUGGAGCa----CG-CCCA- -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 25526 | 0.68 | 0.599794 |
Target: 5'- aCCACGucuuCUUCGcCGcCCUCGgagaGCGGGa -3' miRNA: 3'- -GGUGUu---GAGGC-GCuGGAGCa---CGCCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 35191 | 0.68 | 0.599794 |
Target: 5'- gCGuCGGCUcCCGUGAaguCCUCG-GCGGGg -3' miRNA: 3'- gGU-GUUGA-GGCGCU---GGAGCaCGCCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 57916 | 0.69 | 0.537986 |
Target: 5'- -gGCGGCUcCCGaCGAcCCUCGUGUGuGGa -3' miRNA: 3'- ggUGUUGA-GGC-GCU-GGAGCACGC-CCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 16436 | 0.69 | 0.498002 |
Target: 5'- aCCAguAC-CCGUGGcCCUCGUGUucucGGGUa -3' miRNA: 3'- -GGUguUGaGGCGCU-GGAGCACG----CCCA- -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 52283 | 0.7 | 0.459403 |
Target: 5'- cCCACGagACUCCgGCGAgaacccgaCUCGaUGCGGGg -3' miRNA: 3'- -GGUGU--UGAGG-CGCUg-------GAGC-ACGCCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 19850 | 0.78 | 0.161435 |
Target: 5'- aCCGCGACUaCCaCGACCUCG-GUGGGg -3' miRNA: 3'- -GGUGUUGA-GGcGCUGGAGCaCGCCCa -5' |
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12679 | 5' | -57.8 | NC_003345.1 | + | 72266 | 1.09 | 0.001085 |
Target: 5'- aCCACAACUCCGCGACCUCGUGCGGGUc -3' miRNA: 3'- -GGUGUUGAGGCGCUGGAGCACGCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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