Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12680 | 3' | -50 | NC_003345.1 | + | 875 | 0.67 | 0.959179 |
Target: 5'- cGGAGAcguacuUAcCCGCccccGACCGUUCGggGGg -3' miRNA: 3'- -UCUCUu-----AUaGGUG----CUGGCGAGCuuCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 2495 | 0.68 | 0.941238 |
Target: 5'- cGGGAGUGUCC-CGACUua-CGAGGAa -3' miRNA: 3'- uCUCUUAUAGGuGCUGGcgaGCUUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 11523 | 0.66 | 0.969869 |
Target: 5'- cGGAGGAaaugaugcgcuUGUucCCACGgcuccagaugaACCGUUCGAGGAa -3' miRNA: 3'- -UCUCUU-----------AUA--GGUGC-----------UGGCGAGCUUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 16919 | 0.7 | 0.852395 |
Target: 5'- cGGGGAacGUGg-CACGACCGCcgUGAAGAa -3' miRNA: 3'- -UCUCU--UAUagGUGCUGGCGa-GCUUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 20500 | 0.68 | 0.930607 |
Target: 5'- gAGAGAugAUGUCCACcucgucGCCGUUgcCGAAGGg -3' miRNA: 3'- -UCUCU--UAUAGGUGc-----UGGCGA--GCUUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 21621 | 0.66 | 0.978391 |
Target: 5'- gAGAGGAUGa-CACGGCgGCcuUCGAGGu -3' miRNA: 3'- -UCUCUUAUagGUGCUGgCG--AGCUUCu -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 21764 | 0.72 | 0.797263 |
Target: 5'- cGAGggUGUcCCGCaGGCCGC-CGAccAGAu -3' miRNA: 3'- uCUCuuAUA-GGUG-CUGGCGaGCU--UCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 23249 | 0.68 | 0.930607 |
Target: 5'- aGGAGAGUcgCCGucuCCGCUCGGucggGGAg -3' miRNA: 3'- -UCUCUUAuaGGUgcuGGCGAGCU----UCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 29409 | 0.68 | 0.936063 |
Target: 5'- -------uUCCACGACCGUccCGAGGAa -3' miRNA: 3'- ucucuuauAGGUGCUGGCGa-GCUUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 30513 | 0.69 | 0.899108 |
Target: 5'- cGAGGuggguUGUCCACuuCUGCUCGaAAGAg -3' miRNA: 3'- uCUCUu----AUAGGUGcuGGCGAGC-UUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 54075 | 0.66 | 0.97495 |
Target: 5'- cGAGAGUGUCacgaauccgacuaaCACGACCGg-CGgcGAg -3' miRNA: 3'- uCUCUUAUAG--------------GUGCUGGCgaGCuuCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 58114 | 0.69 | 0.912547 |
Target: 5'- cGAGGAagacguUAUCCGCGACC--UCGAAGc -3' miRNA: 3'- uCUCUU------AUAGGUGCUGGcgAGCUUCu -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 65045 | 0.66 | 0.978391 |
Target: 5'- uGAGAAUcaaCCACGAUgCGUUCGuGGAu -3' miRNA: 3'- uCUCUUAua-GGUGCUG-GCGAGCuUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 65423 | 0.66 | 0.97294 |
Target: 5'- -cAGAGUGUCCACG-UCGCgcauccacucaUCGAGGu -3' miRNA: 3'- ucUCUUAUAGGUGCuGGCG-----------AGCUUCu -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 66004 | 0.76 | 0.547879 |
Target: 5'- -cGGAAUGUCCACGucgaaauACUGCUCGggGu -3' miRNA: 3'- ucUCUUAUAGGUGC-------UGGCGAGCuuCu -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 69770 | 0.76 | 0.5708 |
Target: 5'- uGGAGGAcGUgCGCGACCGCUCGuacuGGu -3' miRNA: 3'- -UCUCUUaUAgGUGCUGGCGAGCuu--CU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 72925 | 1.1 | 0.004947 |
Target: 5'- gAGAGAAUAUCCACGACCGCUCGAAGAc -3' miRNA: 3'- -UCUCUUAUAGGUGCUGGCGAGCUUCU- -5' |
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12680 | 3' | -50 | NC_003345.1 | + | 74431 | 0.68 | 0.936063 |
Target: 5'- cGGAGAAUAUCCu---CCGCaaGGAGGu -3' miRNA: 3'- -UCUCUUAUAGGugcuGGCGagCUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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