Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12680 | 5' | -53.3 | NC_003345.1 | + | 72960 | 1.1 | 0.001637 |
Target: 5'- aAAUCUUCAAGCCAGCCCAACCGUCGCg -3' miRNA: 3'- -UUAGAAGUUCGGUCGGGUUGGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 59303 | 0.66 | 0.865957 |
Target: 5'- -----cCGAGCCAGCaCC-GCCGuaauUCGCa -3' miRNA: 3'- uuagaaGUUCGGUCG-GGuUGGC----AGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 49815 | 0.69 | 0.711574 |
Target: 5'- cAUCUacaaUCGGGUCAaCCgGGCCGUCGUa -3' miRNA: 3'- uUAGA----AGUUCGGUcGGgUUGGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 70867 | 0.7 | 0.65702 |
Target: 5'- cGGUCUUCGGGCgGGCCgGguuCCaUCGCu -3' miRNA: 3'- -UUAGAAGUUCGgUCGGgUu--GGcAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 39660 | 0.71 | 0.569021 |
Target: 5'- -uUCUgcgUGAGCCAuagcucGuCCCGACCGUCGUa -3' miRNA: 3'- uuAGAa--GUUCGGU------C-GGGUUGGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 51674 | 0.73 | 0.463927 |
Target: 5'- uGGUCUUCGAGCCAaaCCAgauguucgagauACCaGUCGCa -3' miRNA: 3'- -UUAGAAGUUCGGUcgGGU------------UGG-CAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 65826 | 0.75 | 0.387627 |
Target: 5'- --gCUUCGA-CCAGCUC-ACCGUCGCu -3' miRNA: 3'- uuaGAAGUUcGGUCGGGuUGGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 14811 | 0.7 | 0.633856 |
Target: 5'- uAGUCUUCuuccgaccgagguAGGCUAuGUCCGgcuuGCCGUCGCg -3' miRNA: 3'- -UUAGAAG-------------UUCGGU-CGGGU----UGGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 16764 | 0.67 | 0.803843 |
Target: 5'- -cUCggCAAGCCAGCUUGucUCGUUGCu -3' miRNA: 3'- uuAGaaGUUCGGUCGGGUu-GGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 34194 | 0.67 | 0.813339 |
Target: 5'- uAGUCUUCAAGCUcuuuuccaAGCCCA-CCGg--- -3' miRNA: 3'- -UUAGAAGUUCGG--------UCGGGUuGGCagcg -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 19674 | 0.67 | 0.831747 |
Target: 5'- cGUCUccUCGuGUuuCAGCUCAGCCuGUCGCu -3' miRNA: 3'- uUAGA--AGUuCG--GUCGGGUUGG-CAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 44481 | 0.66 | 0.840638 |
Target: 5'- -cUUUUCGgauAGCCgaaGGCauaCCAAUCGUCGCg -3' miRNA: 3'- uuAGAAGU---UCGG---UCG---GGUUGGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 2723 | 0.66 | 0.84931 |
Target: 5'- cGUCUUCGGuGUCAcuaccGCCgucGCCGUCGCu -3' miRNA: 3'- uUAGAAGUU-CGGU-----CGGgu-UGGCAGCG- -5' |
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12680 | 5' | -53.3 | NC_003345.1 | + | 73615 | 0.71 | 0.601874 |
Target: 5'- uGGUCUUCGAGCaugaaGGCCCG--CGUCGg -3' miRNA: 3'- -UUAGAAGUUCGg----UCGGGUugGCAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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