miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12681 3' -51.3 NC_003345.1 + 14591 0.66 0.962724
Target:  5'- uGGagCGUUcCACGGCgCUCGUGGgucGCCa- -3'
miRNA:   3'- -CCa-GCAA-GUGCUG-GAGCACUa--UGGcc -5'
12681 3' -51.3 NC_003345.1 + 12373 0.66 0.96619
Target:  5'- aGUCGUUCAuCGGCUcCGgcccACCGGa -3'
miRNA:   3'- cCAGCAAGU-GCUGGaGCacuaUGGCC- -5'
12681 3' -51.3 NC_003345.1 + 25773 0.66 0.969423
Target:  5'- -cUCGUugaaguucagcUCAacuucccacgccUGACCUCGguaGAUACCGGa -3'
miRNA:   3'- ccAGCA-----------AGU------------GCUGGAGCa--CUAUGGCC- -5'
12681 3' -51.3 NC_003345.1 + 37673 0.66 0.969423
Target:  5'- cGGg-GUUCugGaacGCCUCGUGGUcaACCa- -3'
miRNA:   3'- -CCagCAAGugC---UGGAGCACUA--UGGcc -5'
12681 3' -51.3 NC_003345.1 + 32219 0.66 0.973287
Target:  5'- gGGUUGUUgACGAuaaccuucaccagcuCCUCGUcguucacGAgGCCGGu -3'
miRNA:   3'- -CCAGCAAgUGCU---------------GGAGCA-------CUaUGGCC- -5'
12681 3' -51.3 NC_003345.1 + 26791 0.77 0.502605
Target:  5'- gGGUCGUUCACuAUCUCGUGG--UCGGu -3'
miRNA:   3'- -CCAGCAAGUGcUGGAGCACUauGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.