miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12681 5' -49.8 NC_003345.1 + 67125 0.66 0.978621
Target:  5'- cGGCUUcCAaGCUCGAAGAagGCGAc- -3'
miRNA:   3'- -CCGGAaGUaCGAGCUUCUggUGUUag -5'
12681 5' -49.8 NC_003345.1 + 59513 0.66 0.97007
Target:  5'- cGGCCaUCGcGCUCGA--ACCAgUAAUCc -3'
miRNA:   3'- -CCGGaAGUaCGAGCUucUGGU-GUUAG- -5'
12681 5' -49.8 NC_003345.1 + 50503 0.66 0.96674
Target:  5'- cGCCgcuggaaaUCAucUGCguaUCGcGGGCCACAAUCg -3'
miRNA:   3'- cCGGa-------AGU--ACG---AGCuUCUGGUGUUAG- -5'
12681 5' -49.8 NC_003345.1 + 6451 0.69 0.898601
Target:  5'- uGGCCUUCAUuggGCcgUCGAGGAaCGCA-UCg -3'
miRNA:   3'- -CCGGAAGUA---CG--AGCUUCUgGUGUuAG- -5'
12681 5' -49.8 NC_003345.1 + 75011 0.7 0.876119
Target:  5'- aGUCgaaaUCcgGCUCaGaAAGGCCACAAUCg -3'
miRNA:   3'- cCGGa---AGuaCGAG-C-UUCUGGUGUUAG- -5'
12681 5' -49.8 NC_003345.1 + 63486 0.7 0.868092
Target:  5'- gGGCCUUCGUaGCgCGAGuGACCugAu-- -3'
miRNA:   3'- -CCGGAAGUA-CGaGCUU-CUGGugUuag -5'
12681 5' -49.8 NC_003345.1 + 34982 0.71 0.795418
Target:  5'- cGCCUgaaUAUGCUCGAAcgggccgaaguGACCACGAc- -3'
miRNA:   3'- cCGGAa--GUACGAGCUU-----------CUGGUGUUag -5'
12681 5' -49.8 NC_003345.1 + 33092 0.71 0.795418
Target:  5'- cGCCguggUC-UGCUCGAAGuCCAgacCAAUCg -3'
miRNA:   3'- cCGGa---AGuACGAGCUUCuGGU---GUUAG- -5'
12681 5' -49.8 NC_003345.1 + 51768 0.73 0.711484
Target:  5'- uGGUUUg---GCUCGAAGACCACGGa- -3'
miRNA:   3'- -CCGGAaguaCGAGCUUCUGGUGUUag -5'
12681 5' -49.8 NC_003345.1 + 40539 0.73 0.700499
Target:  5'- cGGCCUcaaCAUGgUCGAAGAcuaCCACGAcuUCa -3'
miRNA:   3'- -CCGGAa--GUACgAGCUUCU---GGUGUU--AG- -5'
12681 5' -49.8 NC_003345.1 + 15541 0.74 0.667177
Target:  5'- uGGCCUgaUgGUGUUCGGAGcugUCACAAUCa -3'
miRNA:   3'- -CCGGA--AgUACGAGCUUCu--GGUGUUAG- -5'
12681 5' -49.8 NC_003345.1 + 73517 1.14 0.002608
Target:  5'- gGGCCUUCAUGCUCGAAGACCACAAUCg -3'
miRNA:   3'- -CCGGAAGUACGAGCUUCUGGUGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.