Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 38028 | 0.66 | 0.683898 |
|
Target: 5'- cGGGUaaUCACUucauCGAGCuggcuGAGUCCGa -3' miRNA: 3'- uCCCAgaAGUGGu---GCUCGc----CUCAGGC- -5' |
|||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 9505 | 0.67 | 0.641919 |
|
Target: 5'- aAGGGcC-UCuCCACG-GCaagGGAGUCCGg -3' miRNA: 3'- -UCCCaGaAGuGGUGCuCG---CCUCAGGC- -5' |
|||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 13880 | 0.67 | 0.641919 |
|
Target: 5'- cGGGUgUUCcgaCGCGAGCuGGuAGUCCc -3' miRNA: 3'- uCCCAgAAGug-GUGCUCG-CC-UCAGGc -5' |
|||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 44106 | 0.67 | 0.631381 |
|
Target: 5'- --uGUgUUC-CCGCGAacGCGGAGUCCa -3' miRNA: 3'- uccCAgAAGuGGUGCU--CGCCUCAGGc -5' |
|||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 12235 | 0.69 | 0.53753 |
|
Target: 5'- -cGGUUaUCGCCACGGuGCGGcuUCCGg -3' miRNA: 3'- ucCCAGaAGUGGUGCU-CGCCucAGGC- -5' |
|||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 34140 | 0.7 | 0.481527 |
|
Target: 5'- aAGGGcgCUUCGCCcCGAGCGGccuacuacgguaacaAGUUCa -3' miRNA: 3'- -UCCCa-GAAGUGGuGCUCGCC---------------UCAGGc -5' |
|||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 14976 | 0.7 | 0.487399 |
|
Target: 5'- cGGG-CUUCGCuccgaaCACGGGCGacGAGUCCa -3' miRNA: 3'- uCCCaGAAGUG------GUGCUCGC--CUCAGGc -5' |
|||||||
| 12682 | 5' | -57.4 | NC_003345.1 | + | 74054 | 1.09 | 0.000973 |
|
Target: 5'- gAGGGUCUUCACCACGAGCGGAGUCCGg -3' miRNA: 3'- -UCCCAGAAGUGGUGCUCGCCUCAGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home