Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12684 | 3' | -55.9 | NC_003345.1 | + | 30995 | 0.66 | 0.778599 |
Target: 5'- --cUCGCCGCCgccgGUUUAGaagcGCAGaGUCa -3' miRNA: 3'- guuAGCGGCGGa---CGAGUU----CGUC-CAGc -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 25515 | 0.66 | 0.778599 |
Target: 5'- --uUCGCCGCC--CUCGgagAGCGGGaCGg -3' miRNA: 3'- guuAGCGGCGGacGAGU---UCGUCCaGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 27793 | 0.66 | 0.758743 |
Target: 5'- gUAGUCaCCGCCcugcGCUCGGGCAGuUUGa -3' miRNA: 3'- -GUUAGcGGCGGa---CGAGUUCGUCcAGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 20201 | 0.66 | 0.75572 |
Target: 5'- -cGUCgGCCaCCUuuucgauuccaaacGCaUCGAGCAGGUCGa -3' miRNA: 3'- guUAG-CGGcGGA--------------CG-AGUUCGUCCAGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 46808 | 0.67 | 0.717626 |
Target: 5'- --cUCGCCGUCgucaaagGCgUCAcGCGGGUUGu -3' miRNA: 3'- guuAGCGGCGGa------CG-AGUuCGUCCAGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 75985 | 0.67 | 0.717626 |
Target: 5'- ---aCGauaCGaCCUGCUUGAGCAGG-CGg -3' miRNA: 3'- guuaGCg--GC-GGACGAGUUCGUCCaGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 21460 | 0.68 | 0.642947 |
Target: 5'- aCAGUUGCCGag-GCUCAc-CGGGUCGu -3' miRNA: 3'- -GUUAGCGGCggaCGAGUucGUCCAGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 63703 | 0.69 | 0.567754 |
Target: 5'- uCAAUCGCuuCGCC-GCUgGAGUcGGUCGu -3' miRNA: 3'- -GUUAGCG--GCGGaCGAgUUCGuCCAGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 9363 | 0.7 | 0.5041 |
Target: 5'- uCAAUCGCCGCCucagcgauUGCccaaucgggaaucUCGucggguaacuccGGCGGGUCGa -3' miRNA: 3'- -GUUAGCGGCGG--------ACG-------------AGU------------UCGUCCAGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 23245 | 0.71 | 0.484889 |
Target: 5'- gAGUCGCCGUCUccGCUCGgucggggagAGCGGG-CGu -3' miRNA: 3'- gUUAGCGGCGGA--CGAGU---------UCGUCCaGC- -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 64214 | 0.73 | 0.338825 |
Target: 5'- aCGGUCGuauucccCCGCCUGUUCAcacGGCAGGUa- -3' miRNA: 3'- -GUUAGC-------GGCGGACGAGU---UCGUCCAgc -5' |
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12684 | 3' | -55.9 | NC_003345.1 | + | 75876 | 1.08 | 0.001445 |
Target: 5'- gCAAUCGCCGCCUGCUCAAGCAGGUCGu -3' miRNA: 3'- -GUUAGCGGCGGACGAGUUCGUCCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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