Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 77056 | 1.07 | 0.002053 |
Target: 5'- cAGAUGAGGACACCACCCUCGAUGCGUu -3' miRNA: 3'- -UCUACUCCUGUGGUGGGAGCUACGCA- -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 70512 | 0.81 | 0.116246 |
Target: 5'- uGAUGAGGACgaaGCCAaccCCCUCGAUGUGg -3' miRNA: 3'- uCUACUCCUG---UGGU---GGGAGCUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 74110 | 0.81 | 0.122467 |
Target: 5'- gAGAUGGcguucuuGGaagaccagaGCGCCACCCUCGAUGCGUa -3' miRNA: 3'- -UCUACU-------CC---------UGUGGUGGGAGCUACGCA- -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 38422 | 0.81 | 0.133285 |
Target: 5'- ---gGAGGugGCCgaaACCCUCGAUGCGUc -3' miRNA: 3'- ucuaCUCCugUGG---UGGGAGCUACGCA- -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 41346 | 0.74 | 0.360963 |
Target: 5'- aGGccGAGGuGCGCCACCgagUUCGAUGCGUu -3' miRNA: 3'- -UCuaCUCC-UGUGGUGG---GAGCUACGCA- -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 63552 | 0.73 | 0.366857 |
Target: 5'- cGGUGAGGACAgCCcgcucacucgcaacAUCCUCGAUGCu- -3' miRNA: 3'- uCUACUCCUGU-GG--------------UGGGAGCUACGca -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 54553 | 0.7 | 0.541947 |
Target: 5'- --cUGAGGAgGaaAUCCUCGAUGCGa -3' miRNA: 3'- ucuACUCCUgUggUGGGAGCUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 55917 | 0.7 | 0.563002 |
Target: 5'- cGgcGAGGACuCCACCUUCGGUGa-- -3' miRNA: 3'- uCuaCUCCUGuGGUGGGAGCUACgca -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 26906 | 0.69 | 0.626119 |
Target: 5'- ---cGGGGGCACUcaagcugaguaacGCCCUCGAUgaGCGg -3' miRNA: 3'- ucuaCUCCUGUGG-------------UGGGAGCUA--CGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 42196 | 0.69 | 0.627196 |
Target: 5'- aGGAUucGGGGACAacaUCAgCCUCGAUGCc- -3' miRNA: 3'- -UCUA--CUCCUGU---GGUgGGAGCUACGca -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 57636 | 0.68 | 0.658389 |
Target: 5'- gAGGUcGGGACGCucagcaaCACCCUCcAUGCGg -3' miRNA: 3'- -UCUAcUCCUGUG-------GUGGGAGcUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 21854 | 0.68 | 0.659463 |
Target: 5'- uGGUGAagucgGuGACGCCGaguacgaCCUCGAUGCGg -3' miRNA: 3'- uCUACU-----C-CUGUGGUg------GGAGCUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 35764 | 0.68 | 0.670183 |
Target: 5'- ---gGAGGACGCCACCauaucCGGUGgGa -3' miRNA: 3'- ucuaCUCCUGUGGUGGga---GCUACgCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 32451 | 0.68 | 0.670183 |
Target: 5'- --uUGGGGAacgcuuccccgaCGCCGaCCUCGAUGCGg -3' miRNA: 3'- ucuACUCCU------------GUGGUgGGAGCUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 30943 | 0.68 | 0.69151 |
Target: 5'- cGAcuUGAGGACGuuuuCCAUCgaacgCUCGAUGCGg -3' miRNA: 3'- uCU--ACUCCUGU----GGUGG-----GAGCUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 51547 | 0.67 | 0.702097 |
Target: 5'- aAGcgGAGcaaAUcCCAcCCCUCGAUGCGUg -3' miRNA: 3'- -UCuaCUCc--UGuGGU-GGGAGCUACGCA- -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 5317 | 0.67 | 0.723065 |
Target: 5'- uGGAUGAGGAgAaCAaaCUUGAUGCGa -3' miRNA: 3'- -UCUACUCCUgUgGUggGAGCUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 18753 | 0.67 | 0.753841 |
Target: 5'- cGGGUGAGGuACuuCAgCC-CGGUGCGa -3' miRNA: 3'- -UCUACUCC-UGugGUgGGaGCUACGCa -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 24114 | 0.66 | 0.763876 |
Target: 5'- ---cGAacGGA-ACCgaACCCUCGAUGCGUg -3' miRNA: 3'- ucuaCU--CCUgUGG--UGGGAGCUACGCA- -5' |
|||||||
12685 | 3' | -55.5 | NC_003345.1 | + | 45960 | 0.66 | 0.773782 |
Target: 5'- cGGAUGGGGAaGCCACcggcccaauCCUCGGggucaagccccgUGCGa -3' miRNA: 3'- -UCUACUCCUgUGGUG---------GGAGCU------------ACGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home