miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12685 5' -54.6 NC_003345.1 + 7659 0.66 0.847268
Target:  5'- uUCGcacAGCUCCGGCAGuAGUaucGCuuGUUCg -3'
miRNA:   3'- -AGU---UCGGGGUUGUCuUCA---CGggCAGG- -5'
12685 5' -54.6 NC_003345.1 + 20321 0.66 0.846424
Target:  5'- --cGGCCCCAcCGGAGGgaGCgucgucgUCGUCCa -3'
miRNA:   3'- aguUCGGGGUuGUCUUCa-CG-------GGCAGG- -5'
12685 5' -54.6 NC_003345.1 + 58156 0.66 0.821024
Target:  5'- aCAAGCCCgCAGagacCAGAccgGCUCGUUCg -3'
miRNA:   3'- aGUUCGGG-GUU----GUCUucaCGGGCAGG- -5'
12685 5' -54.6 NC_003345.1 + 57962 0.67 0.802556
Target:  5'- -gAAGUCCagAGCGu-AGUGCCCGUCg -3'
miRNA:   3'- agUUCGGGg-UUGUcuUCACGGGCAGg -5'
12685 5' -54.6 NC_003345.1 + 46939 0.67 0.793059
Target:  5'- gUCAAcuGCCUCGAU-GAAGuUGUCCGUCg -3'
miRNA:   3'- -AGUU--CGGGGUUGuCUUC-ACGGGCAGg -5'
12685 5' -54.6 NC_003345.1 + 48289 0.67 0.7921
Target:  5'- --uGGCUCCAccaacgaGCGGAauggAGuUGCCCGUUCa -3'
miRNA:   3'- aguUCGGGGU-------UGUCU----UC-ACGGGCAGG- -5'
12685 5' -54.6 NC_003345.1 + 63320 0.67 0.7834
Target:  5'- cUCAccGGCCCCucggcCAGc-GUGCCCGUg- -3'
miRNA:   3'- -AGU--UCGGGGuu---GUCuuCACGGGCAgg -5'
12685 5' -54.6 NC_003345.1 + 35283 0.67 0.763638
Target:  5'- -gAAGgCCCAAUGGGAG-GCCCGa-- -3'
miRNA:   3'- agUUCgGGGUUGUCUUCaCGGGCagg -5'
12685 5' -54.6 NC_003345.1 + 29375 0.7 0.615532
Target:  5'- -gAGGCCCCAACAGguGUGgcacUUCGUCg -3'
miRNA:   3'- agUUCGGGGUUGUCuuCAC----GGGCAGg -5'
12685 5' -54.6 NC_003345.1 + 63560 0.7 0.60474
Target:  5'- aCGAGUCCCAcgucgGCAGGAGcGCCC--CCa -3'
miRNA:   3'- aGUUCGGGGU-----UGUCUUCaCGGGcaGG- -5'
12685 5' -54.6 NC_003345.1 + 33649 0.71 0.57681
Target:  5'- aUCGAGUUugacagcucgaugaaCCAGCGGGAGUGCCuCGaagCCg -3'
miRNA:   3'- -AGUUCGG---------------GGUUGUCUUCACGG-GCa--GG- -5'
12685 5' -54.6 NC_003345.1 + 67393 0.71 0.551288
Target:  5'- -gAAGCCCCAcacGCAGggGcGCUCGacgcugguguUCCa -3'
miRNA:   3'- agUUCGGGGU---UGUCuuCaCGGGC----------AGG- -5'
12685 5' -54.6 NC_003345.1 + 62864 0.78 0.236747
Target:  5'- gUAGGCCCCGACGuGGAGUaGCCCucagaGUCCc -3'
miRNA:   3'- aGUUCGGGGUUGU-CUUCA-CGGG-----CAGG- -5'
12685 5' -54.6 NC_003345.1 + 30932 0.8 0.167035
Target:  5'- cUCAAGCCCguCAcuucuugaacccgaGCGGAAG-GCCCGUCCu -3'
miRNA:   3'- -AGUUCGGG--GU--------------UGUCUUCaCGGGCAGG- -5'
12685 5' -54.6 NC_003345.1 + 77090 1.11 0.001211
Target:  5'- cUCAAGCCCCAACAGAAGUGCCCGUCCc -3'
miRNA:   3'- -AGUUCGGGGUUGUCUUCACGGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.