Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12685 | 5' | -54.6 | NC_003345.1 | + | 7659 | 0.66 | 0.847268 |
Target: 5'- uUCGcacAGCUCCGGCAGuAGUaucGCuuGUUCg -3' miRNA: 3'- -AGU---UCGGGGUUGUCuUCA---CGggCAGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 20321 | 0.66 | 0.846424 |
Target: 5'- --cGGCCCCAcCGGAGGgaGCgucgucgUCGUCCa -3' miRNA: 3'- aguUCGGGGUuGUCUUCa-CG-------GGCAGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 29375 | 0.7 | 0.615532 |
Target: 5'- -gAGGCCCCAACAGguGUGgcacUUCGUCg -3' miRNA: 3'- agUUCGGGGUUGUCuuCAC----GGGCAGg -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 30932 | 0.8 | 0.167035 |
Target: 5'- cUCAAGCCCguCAcuucuugaacccgaGCGGAAG-GCCCGUCCu -3' miRNA: 3'- -AGUUCGGG--GU--------------UGUCUUCaCGGGCAGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 33649 | 0.71 | 0.57681 |
Target: 5'- aUCGAGUUugacagcucgaugaaCCAGCGGGAGUGCCuCGaagCCg -3' miRNA: 3'- -AGUUCGG---------------GGUUGUCUUCACGG-GCa--GG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 35283 | 0.67 | 0.763638 |
Target: 5'- -gAAGgCCCAAUGGGAG-GCCCGa-- -3' miRNA: 3'- agUUCgGGGUUGUCUUCaCGGGCagg -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 46939 | 0.67 | 0.793059 |
Target: 5'- gUCAAcuGCCUCGAU-GAAGuUGUCCGUCg -3' miRNA: 3'- -AGUU--CGGGGUUGuCUUC-ACGGGCAGg -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 48289 | 0.67 | 0.7921 |
Target: 5'- --uGGCUCCAccaacgaGCGGAauggAGuUGCCCGUUCa -3' miRNA: 3'- aguUCGGGGU-------UGUCU----UC-ACGGGCAGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 57962 | 0.67 | 0.802556 |
Target: 5'- -gAAGUCCagAGCGu-AGUGCCCGUCg -3' miRNA: 3'- agUUCGGGg-UUGUcuUCACGGGCAGg -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 58156 | 0.66 | 0.821024 |
Target: 5'- aCAAGCCCgCAGagacCAGAccgGCUCGUUCg -3' miRNA: 3'- aGUUCGGG-GUU----GUCUucaCGGGCAGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 62864 | 0.78 | 0.236747 |
Target: 5'- gUAGGCCCCGACGuGGAGUaGCCCucagaGUCCc -3' miRNA: 3'- aGUUCGGGGUUGU-CUUCA-CGGG-----CAGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 63320 | 0.67 | 0.7834 |
Target: 5'- cUCAccGGCCCCucggcCAGc-GUGCCCGUg- -3' miRNA: 3'- -AGU--UCGGGGuu---GUCuuCACGGGCAgg -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 63560 | 0.7 | 0.60474 |
Target: 5'- aCGAGUCCCAcgucgGCAGGAGcGCCC--CCa -3' miRNA: 3'- aGUUCGGGGU-----UGUCUUCaCGGGcaGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 67393 | 0.71 | 0.551288 |
Target: 5'- -gAAGCCCCAcacGCAGggGcGCUCGacgcugguguUCCa -3' miRNA: 3'- agUUCGGGGU---UGUCuuCaCGGGC----------AGG- -5' |
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12685 | 5' | -54.6 | NC_003345.1 | + | 77090 | 1.11 | 0.001211 |
Target: 5'- cUCAAGCCCCAACAGAAGUGCCCGUCCc -3' miRNA: 3'- -AGUUCGGGGUUGUCUUCACGGGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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