miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12686 3' -54.9 NC_003345.1 + 65541 0.66 0.799305
Target:  5'- uCACCAGcgGAgucgucguaACCGGGgCGGCUaCUg -3'
miRNA:   3'- uGUGGUCuaCU---------UGGUCUgGCCGA-GAg -5'
12686 3' -54.9 NC_003345.1 + 1348 0.66 0.779926
Target:  5'- aACACCGGGaaacacguucgGGGCCGGGCagGGUUUUCa -3'
miRNA:   3'- -UGUGGUCUa----------CUUGGUCUGg-CCGAGAG- -5'
12686 3' -54.9 NC_003345.1 + 58453 0.67 0.770006
Target:  5'- uCACCGGAUGAuuuACCuccccGACgCGGUUCa- -3'
miRNA:   3'- uGUGGUCUACU---UGGu----CUG-GCCGAGag -5'
12686 3' -54.9 NC_003345.1 + 47458 0.68 0.686585
Target:  5'- aACACCAGAUGAAgaCGcuCCGGUUCa- -3'
miRNA:   3'- -UGUGGUCUACUUg-GUcuGGCCGAGag -5'
12686 3' -54.9 NC_003345.1 + 22014 0.69 0.632429
Target:  5'- uACACCgAGGUagaGAGCCuacauCCGGUUCUCa -3'
miRNA:   3'- -UGUGG-UCUA---CUUGGucu--GGCCGAGAG- -5'
12686 3' -54.9 NC_003345.1 + 21896 0.7 0.589033
Target:  5'- -uGCCgAGAUugaGAACCGGAUguaGGCUCUCu -3'
miRNA:   3'- ugUGG-UCUA---CUUGGUCUGg--CCGAGAG- -5'
12686 3' -54.9 NC_003345.1 + 55689 0.7 0.567513
Target:  5'- -gGCUgaaguGcgGAACCGGGuuGGCUCUCg -3'
miRNA:   3'- ugUGGu----CuaCUUGGUCUggCCGAGAG- -5'
12686 3' -54.9 NC_003345.1 + 28307 0.71 0.535634
Target:  5'- cUACUGGuguggGAACCGGAcgcCCGGCUCUUa -3'
miRNA:   3'- uGUGGUCua---CUUGGUCU---GGCCGAGAG- -5'
12686 3' -54.9 NC_003345.1 + 26743 0.72 0.454229
Target:  5'- cGCACuCGGGa----CAGACCGGCUCUCc -3'
miRNA:   3'- -UGUG-GUCUacuugGUCUGGCCGAGAG- -5'
12686 3' -54.9 NC_003345.1 + 58153 0.73 0.425454
Target:  5'- aGCcCgCAGA--GACCAGACCGGCUCg- -3'
miRNA:   3'- -UGuG-GUCUacUUGGUCUGGCCGAGag -5'
12686 3' -54.9 NC_003345.1 + 68885 0.74 0.362758
Target:  5'- -uGCCGuGGUcgggaacgucGAACCAGACCGGCUCg- -3'
miRNA:   3'- ugUGGU-CUA----------CUUGGUCUGGCCGAGag -5'
12686 3' -54.9 NC_003345.1 + 8170 0.76 0.264241
Target:  5'- cACACCGGAUGAACCGGGucguCgGGCUUcagUCg -3'
miRNA:   3'- -UGUGGUCUACUUGGUCU----GgCCGAG---AG- -5'
12686 3' -54.9 NC_003345.1 + 77145 1.08 0.001688
Target:  5'- cACACCAGAUGAACCAGACCGGCUCUCc -3'
miRNA:   3'- -UGUGGUCUACUUGGUCUGGCCGAGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.