Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12686 | 3' | -54.9 | NC_003345.1 | + | 65541 | 0.66 | 0.799305 |
Target: 5'- uCACCAGcgGAgucgucguaACCGGGgCGGCUaCUg -3' miRNA: 3'- uGUGGUCuaCU---------UGGUCUgGCCGA-GAg -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 1348 | 0.66 | 0.779926 |
Target: 5'- aACACCGGGaaacacguucgGGGCCGGGCagGGUUUUCa -3' miRNA: 3'- -UGUGGUCUa----------CUUGGUCUGg-CCGAGAG- -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 58453 | 0.67 | 0.770006 |
Target: 5'- uCACCGGAUGAuuuACCuccccGACgCGGUUCa- -3' miRNA: 3'- uGUGGUCUACU---UGGu----CUG-GCCGAGag -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 47458 | 0.68 | 0.686585 |
Target: 5'- aACACCAGAUGAAgaCGcuCCGGUUCa- -3' miRNA: 3'- -UGUGGUCUACUUg-GUcuGGCCGAGag -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 22014 | 0.69 | 0.632429 |
Target: 5'- uACACCgAGGUagaGAGCCuacauCCGGUUCUCa -3' miRNA: 3'- -UGUGG-UCUA---CUUGGucu--GGCCGAGAG- -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 21896 | 0.7 | 0.589033 |
Target: 5'- -uGCCgAGAUugaGAACCGGAUguaGGCUCUCu -3' miRNA: 3'- ugUGG-UCUA---CUUGGUCUGg--CCGAGAG- -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 55689 | 0.7 | 0.567513 |
Target: 5'- -gGCUgaaguGcgGAACCGGGuuGGCUCUCg -3' miRNA: 3'- ugUGGu----CuaCUUGGUCUggCCGAGAG- -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 28307 | 0.71 | 0.535634 |
Target: 5'- cUACUGGuguggGAACCGGAcgcCCGGCUCUUa -3' miRNA: 3'- uGUGGUCua---CUUGGUCU---GGCCGAGAG- -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 26743 | 0.72 | 0.454229 |
Target: 5'- cGCACuCGGGa----CAGACCGGCUCUCc -3' miRNA: 3'- -UGUG-GUCUacuugGUCUGGCCGAGAG- -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 58153 | 0.73 | 0.425454 |
Target: 5'- aGCcCgCAGA--GACCAGACCGGCUCg- -3' miRNA: 3'- -UGuG-GUCUacUUGGUCUGGCCGAGag -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 68885 | 0.74 | 0.362758 |
Target: 5'- -uGCCGuGGUcgggaacgucGAACCAGACCGGCUCg- -3' miRNA: 3'- ugUGGU-CUA----------CUUGGUCUGGCCGAGag -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 8170 | 0.76 | 0.264241 |
Target: 5'- cACACCGGAUGAACCGGGucguCgGGCUUcagUCg -3' miRNA: 3'- -UGUGGUCUACUUGGUCU----GgCCGAG---AG- -5' |
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12686 | 3' | -54.9 | NC_003345.1 | + | 77145 | 1.08 | 0.001688 |
Target: 5'- cACACCAGAUGAACCAGACCGGCUCUCc -3' miRNA: 3'- -UGUGGUCUACUUGGUCUGGCCGAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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