miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12686 5' -46.6 NC_003345.1 + 65262 0.66 0.998262
Target:  5'- cGGAGAGCUGA-CgGAaguggggacguugAAAUCUACGc -3'
miRNA:   3'- uCCUCUCGAUUaGaCU-------------UUUAGGUGCu -5'
12686 5' -46.6 NC_003345.1 + 34397 0.66 0.997492
Target:  5'- cGGuGAGCUGGUCgcUGAGGucGUCCAg-- -3'
miRNA:   3'- uCCuCUCGAUUAG--ACUUU--UAGGUgcu -5'
12686 5' -46.6 NC_003345.1 + 4700 0.67 0.995638
Target:  5'- -cGAGAGCUGGaagaugcUCUGAAcgugcuguAAUCCaACGAu -3'
miRNA:   3'- ucCUCUCGAUU-------AGACUU--------UUAGG-UGCU- -5'
12686 5' -46.6 NC_003345.1 + 50416 0.67 0.993011
Target:  5'- cGGGGAGUaGGUCUGcu--UCCACa- -3'
miRNA:   3'- uCCUCUCGaUUAGACuuuuAGGUGcu -5'
12686 5' -46.6 NC_003345.1 + 69064 0.67 0.993011
Target:  5'- gAGGAGGGCaagGAgacgGAAGAccgcaucaUCCACGAu -3'
miRNA:   3'- -UCCUCUCGa--UUaga-CUUUU--------AGGUGCU- -5'
12686 5' -46.6 NC_003345.1 + 57740 0.68 0.991856
Target:  5'- uGGAGGGUguugCUGAGcGUCC-CGAc -3'
miRNA:   3'- uCCUCUCGauuaGACUUuUAGGuGCU- -5'
12686 5' -46.6 NC_003345.1 + 26641 0.68 0.990555
Target:  5'- cGGAGAGCcGGUCUG----UCC-CGAg -3'
miRNA:   3'- uCCUCUCGaUUAGACuuuuAGGuGCU- -5'
12686 5' -46.6 NC_003345.1 + 3975 0.69 0.983654
Target:  5'- aAGGAGuguGGCUucuucauaggcAGUCUGAGuAUCCGCa- -3'
miRNA:   3'- -UCCUC---UCGA-----------UUAGACUUuUAGGUGcu -5'
12686 5' -46.6 NC_003345.1 + 52903 0.69 0.981446
Target:  5'- cGGGAGAGgaAAUCUcGAAAaucGUCCA-GAa -3'
miRNA:   3'- -UCCUCUCgaUUAGA-CUUU---UAGGUgCU- -5'
12686 5' -46.6 NC_003345.1 + 14604 0.71 0.94075
Target:  5'- cGuGGGAGC-GGUCUGGAGcguUCCACGGc -3'
miRNA:   3'- uC-CUCUCGaUUAGACUUUu--AGGUGCU- -5'
12686 5' -46.6 NC_003345.1 + 77007 0.72 0.917382
Target:  5'- cGGGGAGCUGGUC-GAGccAAUCCGgguCGAu -3'
miRNA:   3'- uCCUCUCGAUUAGaCUU--UUAGGU---GCU- -5'
12686 5' -46.6 NC_003345.1 + 60108 0.78 0.622921
Target:  5'- uGGGAGAGCUGAgcCUGAGcguuccgCCACGAc -3'
miRNA:   3'- -UCCUCUCGAUUa-GACUUuua----GGUGCU- -5'
12686 5' -46.6 NC_003345.1 + 77180 1.11 0.008616
Target:  5'- aAGGAGAGCUAAUCUGAAAAUCCACGAg -3'
miRNA:   3'- -UCCUCUCGAUUAGACUUUUAGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.