Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12686 | 5' | -46.6 | NC_003345.1 | + | 77180 | 1.11 | 0.008616 |
Target: 5'- aAGGAGAGCUAAUCUGAAAAUCCACGAg -3' miRNA: 3'- -UCCUCUCGAUUAGACUUUUAGGUGCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 77007 | 0.72 | 0.917382 |
Target: 5'- cGGGGAGCUGGUC-GAGccAAUCCGgguCGAu -3' miRNA: 3'- uCCUCUCGAUUAGaCUU--UUAGGU---GCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 69064 | 0.67 | 0.993011 |
Target: 5'- gAGGAGGGCaagGAgacgGAAGAccgcaucaUCCACGAu -3' miRNA: 3'- -UCCUCUCGa--UUaga-CUUUU--------AGGUGCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 65262 | 0.66 | 0.998262 |
Target: 5'- cGGAGAGCUGA-CgGAaguggggacguugAAAUCUACGc -3' miRNA: 3'- uCCUCUCGAUUaGaCU-------------UUUAGGUGCu -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 60108 | 0.78 | 0.622921 |
Target: 5'- uGGGAGAGCUGAgcCUGAGcguuccgCCACGAc -3' miRNA: 3'- -UCCUCUCGAUUa-GACUUuua----GGUGCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 57740 | 0.68 | 0.991856 |
Target: 5'- uGGAGGGUguugCUGAGcGUCC-CGAc -3' miRNA: 3'- uCCUCUCGauuaGACUUuUAGGuGCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 52903 | 0.69 | 0.981446 |
Target: 5'- cGGGAGAGgaAAUCUcGAAAaucGUCCA-GAa -3' miRNA: 3'- -UCCUCUCgaUUAGA-CUUU---UAGGUgCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 50416 | 0.67 | 0.993011 |
Target: 5'- cGGGGAGUaGGUCUGcu--UCCACa- -3' miRNA: 3'- uCCUCUCGaUUAGACuuuuAGGUGcu -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 34397 | 0.66 | 0.997492 |
Target: 5'- cGGuGAGCUGGUCgcUGAGGucGUCCAg-- -3' miRNA: 3'- uCCuCUCGAUUAG--ACUUU--UAGGUgcu -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 26641 | 0.68 | 0.990555 |
Target: 5'- cGGAGAGCcGGUCUG----UCC-CGAg -3' miRNA: 3'- uCCUCUCGaUUAGACuuuuAGGuGCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 14604 | 0.71 | 0.94075 |
Target: 5'- cGuGGGAGC-GGUCUGGAGcguUCCACGGc -3' miRNA: 3'- uC-CUCUCGaUUAGACUUUu--AGGUGCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 4700 | 0.67 | 0.995638 |
Target: 5'- -cGAGAGCUGGaagaugcUCUGAAcgugcuguAAUCCaACGAu -3' miRNA: 3'- ucCUCUCGAUU-------AGACUU--------UUAGG-UGCU- -5' |
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12686 | 5' | -46.6 | NC_003345.1 | + | 3975 | 0.69 | 0.983654 |
Target: 5'- aAGGAGuguGGCUucuucauaggcAGUCUGAGuAUCCGCa- -3' miRNA: 3'- -UCCUC---UCGA-----------UUAGACUUuUAGGUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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