miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1269 3' -50.4 NC_001317.1 + 19039 1.13 0.000962
Target:  5'- cCCCUCGCCGAGAAACUGAUAAGCAGGc -3'
miRNA:   3'- -GGGAGCGGCUCUUUGACUAUUCGUCC- -5'
1269 3' -50.4 NC_001317.1 + 17821 0.75 0.350762
Target:  5'- gCCUCGgacgguaaaaCCGAGGAACUGGUuaagguuauGCAGGa -3'
miRNA:   3'- gGGAGC----------GGCUCUUUGACUAuu-------CGUCC- -5'
1269 3' -50.4 NC_001317.1 + 1610 0.73 0.458823
Target:  5'- uUCCUCGCCGAcaAAGCUGAUAAccGCAc- -3'
miRNA:   3'- -GGGAGCGGCUc-UUUGACUAUU--CGUcc -5'
1269 3' -50.4 NC_001317.1 + 1391 0.69 0.6877
Target:  5'- gCUgUCGCCGGu--AUUGAUGAGCGGu -3'
miRNA:   3'- -GGgAGCGGCUcuuUGACUAUUCGUCc -5'
1269 3' -50.4 NC_001317.1 + 18335 0.68 0.75583
Target:  5'- gCCCUCaaucacccCCGAGAAaaaugcGCUGAUGGGCu-- -3'
miRNA:   3'- -GGGAGc-------GGCUCUU------UGACUAUUCGucc -5'
1269 3' -50.4 NC_001317.1 + 1033 0.67 0.766762
Target:  5'- cUCUUUGCCagcccgGAGAAGCUGAccGGCGGc -3'
miRNA:   3'- -GGGAGCGG------CUCUUUGACUauUCGUCc -5'
1269 3' -50.4 NC_001317.1 + 9677 0.67 0.766762
Target:  5'- -aUUUGCCGAGggGCUGAUAAu---- -3'
miRNA:   3'- ggGAGCGGCUCuuUGACUAUUcgucc -5'
1269 3' -50.4 NC_001317.1 + 10042 0.67 0.788137
Target:  5'- aUC-CGCCGAGGcaGACg---GAGCGGGg -3'
miRNA:   3'- gGGaGCGGCUCU--UUGacuaUUCGUCC- -5'
1269 3' -50.4 NC_001317.1 + 15218 0.66 0.838106
Target:  5'- aCCCUCaagGCCGGGAAACUGuAUAu----- -3'
miRNA:   3'- -GGGAG---CGGCUCUUUGAC-UAUucgucc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.