miRNA display CGI


Results 1 - 3 of 3 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1269 5' -57.7 NC_001317.1 + 5957 0.66 0.395055
Target:  5'- gACCCGcaUCAUguGACGCUguGCGGg -3'
miRNA:   3'- gUGGGCc-AGUAauCUGCGGguCGCCa -5'
1269 5' -57.7 NC_001317.1 + 6815 0.66 0.433612
Target:  5'- aCGCCCGGU------ACGUCCuGCGGUu -3'
miRNA:   3'- -GUGGGCCAguaaucUGCGGGuCGCCA- -5'
1269 5' -57.7 NC_001317.1 + 19004 1.07 0.000341
Target:  5'- cCACCCGGUCAUUAGACGCCCAGCGGUa -3'
miRNA:   3'- -GUGGGCCAGUAAUCUGCGGGUCGCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.