Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12694 | 3' | -54.9 | NC_003347.1 | + | 5043 | 1.13 | 0.000026 |
Target: 5'- aAGCCACCAUCCAAGCCAACGCCUUCCg -3' miRNA: 3'- -UCGGUGGUAGGUUCGGUUGCGGAAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 1802 | 0.77 | 0.026802 |
Target: 5'- cGCCGCCAUCCccaucGCCAuCGCCcgCCu -3' miRNA: 3'- uCGGUGGUAGGuu---CGGUuGCGGaaGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 1865 | 0.74 | 0.044971 |
Target: 5'- cGGCCACCAUuucaccccccCCAAGauCCucgcuCGCCUUCCc -3' miRNA: 3'- -UCGGUGGUA----------GGUUC--GGuu---GCGGAAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 1352 | 0.73 | 0.049842 |
Target: 5'- cGUCACCGUCCucGAGUCAugGUUcUCCg -3' miRNA: 3'- uCGGUGGUAGG--UUCGGUugCGGaAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 2974 | 0.73 | 0.055226 |
Target: 5'- cGCCACCGU-CGGGCaCuuCGCCUcUCCg -3' miRNA: 3'- uCGGUGGUAgGUUCG-GuuGCGGA-AGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 3969 | 0.7 | 0.094852 |
Target: 5'- cGGCCACCGcgCCAucaCCuacGCGCCUcCCa -3' miRNA: 3'- -UCGGUGGUa-GGUuc-GGu--UGCGGAaGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 629 | 0.69 | 0.104822 |
Target: 5'- cAGCCGCCuUCCAA-CCcGCGaucgaCUUCCu -3' miRNA: 3'- -UCGGUGGuAGGUUcGGuUGCg----GAAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 3215 | 0.69 | 0.10517 |
Target: 5'- -aCCGCCAgccccucccgauccgCCAAGUCcACGCCUacUCCa -3' miRNA: 3'- ucGGUGGUa--------------GGUUCGGuUGCGGA--AGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 1308 | 0.68 | 0.132032 |
Target: 5'- uGGCuCACCAccuccUCCAucaccGCCGGCGaCCU-CCa -3' miRNA: 3'- -UCG-GUGGU-----AGGUu----CGGUUGC-GGAaGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 34 | 0.68 | 0.132032 |
Target: 5'- cGCCACCcuGUCCAAGuCCGGC-CCgugCUc -3' miRNA: 3'- uCGGUGG--UAGGUUC-GGUUGcGGaa-GG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 5924 | 0.67 | 0.17101 |
Target: 5'- uGCCGCCAcgccucUCCccAGCUAAagcuCGCCcUCCg -3' miRNA: 3'- uCGGUGGU------AGGu-UCGGUU----GCGGaAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 5734 | 0.67 | 0.155312 |
Target: 5'- cGCCggcGCCGUCCGcGCCccccGCGCCcuUUUCg -3' miRNA: 3'- uCGG---UGGUAGGUuCGGu---UGCGG--AAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 6077 | 0.67 | 0.155312 |
Target: 5'- aGGCuCACCuccUCCccuccGGCC-ACGCCcUCCa -3' miRNA: 3'- -UCG-GUGGu--AGGu----UCGGuUGCGGaAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 4504 | 0.66 | 0.176549 |
Target: 5'- cAGCCGCCGacgaccauccCCGAGUCAACcccaCCUUCg -3' miRNA: 3'- -UCGGUGGUa---------GGUUCGGUUGc---GGAAGg -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 2830 | 0.66 | 0.188109 |
Target: 5'- uGGCCucuccaccaACCAUCUcaccGCCcuCGCCUUCa -3' miRNA: 3'- -UCGG---------UGGUAGGuu--CGGuuGCGGAAGg -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 4198 | 0.66 | 0.188109 |
Target: 5'- aAGCCGauCCcUCCAAGCCc-CGCC--CCa -3' miRNA: 3'- -UCGGU--GGuAGGUUCGGuuGCGGaaGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 774 | 0.66 | 0.194136 |
Target: 5'- cGCCcUCAaCCAAGCCGGCauccccGCCacUUCCu -3' miRNA: 3'- uCGGuGGUaGGUUCGGUUG------CGG--AAGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 1676 | 0.66 | 0.194136 |
Target: 5'- cGCCcCCGUCCGccCCAACaCCUacuUCCu -3' miRNA: 3'- uCGGuGGUAGGUucGGUUGcGGA---AGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 4313 | 0.66 | 0.194136 |
Target: 5'- cGCCACCcacgccuUCCucGCCcACGCC--CCa -3' miRNA: 3'- uCGGUGGu------AGGuuCGGuUGCGGaaGG- -5' |
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12694 | 3' | -54.9 | NC_003347.1 | + | 3450 | 0.66 | 0.20033 |
Target: 5'- gAGCUACCccAUCCAGcaacugcucGCCAcccaGaCCUUCCg -3' miRNA: 3'- -UCGGUGG--UAGGUU---------CGGUug--C-GGAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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