miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
127 5' -55.5 AC_000006.1 + 15560 0.66 0.595677
Target:  5'- uGACCAGaCCCAgGCGCG-GAaacguguacuGGGUGc -3'
miRNA:   3'- cCUGGUUgGGGUgCGUGCuCU----------UCCAC- -5'
127 5' -55.5 AC_000006.1 + 21023 0.66 0.584466
Target:  5'- uGGACgGgaACCCCAC-CAUGAacuugcugacGggGGUGc -3'
miRNA:   3'- -CCUGgU--UGGGGUGcGUGCU----------CuuCCAC- -5'
127 5' -55.5 AC_000006.1 + 7009 0.67 0.551117
Target:  5'- gGGACagCAGCCCUucuC-CACGGGGAGGg- -3'
miRNA:   3'- -CCUG--GUUGGGGu--GcGUGCUCUUCCac -5'
127 5' -55.5 AC_000006.1 + 630 0.67 0.540125
Target:  5'- aGGGCaCAGuuCCAgGCAgGAGGcgcAGGUGu -3'
miRNA:   3'- -CCUG-GUUggGGUgCGUgCUCU---UCCAC- -5'
127 5' -55.5 AC_000006.1 + 13035 0.67 0.518372
Target:  5'- cGGugCGcACgCCCGCGaGCGAGGGcgcGGUGg -3'
miRNA:   3'- -CCugGU-UG-GGGUGCgUGCUCUU---CCAC- -5'
127 5' -55.5 AC_000006.1 + 4107 0.67 0.518372
Target:  5'- uGGAUCAucuacaacacgACCCCAgaGCACGAGGccaugcaguGGUGc -3'
miRNA:   3'- -CCUGGU-----------UGGGGUg-CGUGCUCUu--------CCAC- -5'
127 5' -55.5 AC_000006.1 + 8342 0.67 0.496975
Target:  5'- cGGuuCCGGCCCCGCGgGCaGGGgcGGc- -3'
miRNA:   3'- -CCu-GGUUGGGGUGCgUG-CUCuuCCac -5'
127 5' -55.5 AC_000006.1 + 15752 0.68 0.46258
Target:  5'- cGGACCAgaaACCCCGCaaaaucaaGCGGGuuaaaaaaaaggauGAGGUGg -3'
miRNA:   3'- -CCUGGU---UGGGGUGcg------UGCUC--------------UUCCAC- -5'
127 5' -55.5 AC_000006.1 + 11299 0.69 0.387592
Target:  5'- aGGAgCgCAGCCugagCUugGC-CGAGAAGGUGg -3'
miRNA:   3'- -CCU-G-GUUGG----GGugCGuGCUCUUCCAC- -5'
127 5' -55.5 AC_000006.1 + 21476 0.7 0.378454
Target:  5'- gGGACCGguGCUCUgcGCGCGCGAGuugcGGUa -3'
miRNA:   3'- -CCUGGU--UGGGG--UGCGUGCUCuu--CCAc -5'
127 5' -55.5 AC_000006.1 + 10012 0.73 0.227027
Target:  5'- gGGGCCAGgUCCucgaGCAUGAGgcGGUGg -3'
miRNA:   3'- -CCUGGUUgGGGug--CGUGCUCuuCCAC- -5'
127 5' -55.5 AC_000006.1 + 17416 0.73 0.220991
Target:  5'- uGGACgAGCCgCCuuCGUACGAGGAGGc- -3'
miRNA:   3'- -CCUGgUUGG-GGu-GCGUGCUCUUCCac -5'
127 5' -55.5 AC_000006.1 + 10963 0.74 0.215093
Target:  5'- gGGAUCAGCCCCgcgccGCGCACGuGgcGGc- -3'
miRNA:   3'- -CCUGGUUGGGG-----UGCGUGCuCuuCCac -5'
127 5' -55.5 AC_000006.1 + 6317 0.74 0.203701
Target:  5'- uGGACUAacgaGCCCC-UGCGCGGcGAGGUGg -3'
miRNA:   3'- -CCUGGU----UGGGGuGCGUGCUcUUCCAC- -5'
127 5' -55.5 AC_000006.1 + 6472 0.77 0.133927
Target:  5'- gGGGCgGACCCCACgGCAUGGGAuGcGUGa -3'
miRNA:   3'- -CCUGgUUGGGGUG-CGUGCUCUuC-CAC- -5'
127 5' -55.5 AC_000006.1 + 11136 0.77 0.130158
Target:  5'- aGGGCCAccuCCUCGCGCGCGAucAGGGUGc -3'
miRNA:   3'- -CCUGGUu--GGGGUGCGUGCUc-UUCCAC- -5'
127 5' -55.5 AC_000006.1 + 11066 0.79 0.086768
Target:  5'- uGugCGcACCCUgaucGCGCGCGAGGAGGUGg -3'
miRNA:   3'- cCugGU-UGGGG----UGCGUGCUCUUCCAC- -5'
127 5' -55.5 AC_000006.1 + 11944 1.1 0.000494
Target:  5'- cGGACCAACCCCACGCACGAGAAGGUGc -3'
miRNA:   3'- -CCUGGUUGGGGUGCGUGCUCUUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.