miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12703 3' -52.1 NC_003349.1 + 75017 0.66 0.980408
Target:  5'- cAGUGgACguUCGGCGACGCaCACUuuACu -3'
miRNA:   3'- -UCAC-UGguAGUUGCUGCG-GUGGu-UGu -5'
12703 3' -52.1 NC_003349.1 + 35699 0.66 0.980408
Target:  5'- cGUGAUCGgucCGACGgcuACGCCACUGAa- -3'
miRNA:   3'- uCACUGGUa--GUUGC---UGCGGUGGUUgu -5'
12703 3' -52.1 NC_003349.1 + 95007 0.66 0.978085
Target:  5'- --aGaACCAUgaggaAACGuuGCCACCAACAg -3'
miRNA:   3'- ucaC-UGGUAg----UUGCugCGGUGGUUGU- -5'
12703 3' -52.1 NC_003349.1 + 14854 0.66 0.975565
Target:  5'- gAGUca-CAUUAugGAUGCCGCgAACAu -3'
miRNA:   3'- -UCAcugGUAGUugCUGCGGUGgUUGU- -5'
12703 3' -52.1 NC_003349.1 + 17038 0.66 0.975565
Target:  5'- uGUGGuCCAagAAUGGCGUaGCCAACGc -3'
miRNA:   3'- uCACU-GGUagUUGCUGCGgUGGUUGU- -5'
12703 3' -52.1 NC_003349.1 + 119260 0.66 0.975565
Target:  5'- uGUGACCGUCAACaacaagaguCGCUACacaGAUAa -3'
miRNA:   3'- uCACUGGUAGUUGcu-------GCGGUGg--UUGU- -5'
12703 3' -52.1 NC_003349.1 + 10309 0.66 0.966741
Target:  5'- --cGACUguaGUCGACGACGCCAUa---- -3'
miRNA:   3'- ucaCUGG---UAGUUGCUGCGGUGguugu -5'
12703 3' -52.1 NC_003349.1 + 35973 0.67 0.963355
Target:  5'- cGUGGCCGUgGACGcuuUGCuCGCgCAACGa -3'
miRNA:   3'- uCACUGGUAgUUGCu--GCG-GUG-GUUGU- -5'
12703 3' -52.1 NC_003349.1 + 45856 0.67 0.955876
Target:  5'- cAG-GACaauUCAACGACGUCAUCGAa- -3'
miRNA:   3'- -UCaCUGgu-AGUUGCUGCGGUGGUUgu -5'
12703 3' -52.1 NC_003349.1 + 85705 0.67 0.951773
Target:  5'- uGUGAUaaguUCAACGAuCGUCACCAuguCAg -3'
miRNA:   3'- uCACUGgu--AGUUGCU-GCGGUGGUu--GU- -5'
12703 3' -52.1 NC_003349.1 + 16988 0.68 0.942819
Target:  5'- --cGACCGUCGcCGGuguUGCCACCGAa- -3'
miRNA:   3'- ucaCUGGUAGUuGCU---GCGGUGGUUgu -5'
12703 3' -52.1 NC_003349.1 + 112743 0.68 0.942819
Target:  5'- cAGUuuuaaauCCAUUAAgGACGUCAUCAACAa -3'
miRNA:   3'- -UCAcu-----GGUAGUUgCUGCGGUGGUUGU- -5'
12703 3' -52.1 NC_003349.1 + 32315 0.68 0.921848
Target:  5'- gGGUG-UCAUgAACGACGCCAaaGACc -3'
miRNA:   3'- -UCACuGGUAgUUGCUGCGGUggUUGu -5'
12703 3' -52.1 NC_003349.1 + 51587 0.69 0.909817
Target:  5'- cGUGcacGCCAUUgcgAAUGACGgCGCCGACGc -3'
miRNA:   3'- uCAC---UGGUAG---UUGCUGCgGUGGUUGU- -5'
12703 3' -52.1 NC_003349.1 + 60837 0.69 0.903418
Target:  5'- cGGUGACCucggGUCGcaaACGuaACGCCGCCGGa- -3'
miRNA:   3'- -UCACUGG----UAGU---UGC--UGCGGUGGUUgu -5'
12703 3' -52.1 NC_003349.1 + 59042 0.69 0.901449
Target:  5'- --cGACaaCAUCGGCGGgugucacgccgucuCGCCGCCGACAc -3'
miRNA:   3'- ucaCUG--GUAGUUGCU--------------GCGGUGGUUGU- -5'
12703 3' -52.1 NC_003349.1 + 21778 0.69 0.896767
Target:  5'- cGUGGCCA---GCGACGgCACCA-CAc -3'
miRNA:   3'- uCACUGGUaguUGCUGCgGUGGUuGU- -5'
12703 3' -52.1 NC_003349.1 + 46646 0.69 0.889868
Target:  5'- uGUGGCgAUagCAGuCGACGCCAUgGACAu -3'
miRNA:   3'- uCACUGgUA--GUU-GCUGCGGUGgUUGU- -5'
12703 3' -52.1 NC_003349.1 + 74862 0.7 0.86772
Target:  5'- aAGUGugCGUCGcCGaACGuCCACUGACGu -3'
miRNA:   3'- -UCACugGUAGUuGC-UGC-GGUGGUUGU- -5'
12703 3' -52.1 NC_003349.1 + 114681 0.72 0.789756
Target:  5'- cGUGA-CAUUAACGACGCCGUCAAUc -3'
miRNA:   3'- uCACUgGUAGUUGCUGCGGUGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.