miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12705 3' -55 NC_003349.1 + 20383 0.65 0.907551
Target:  5'- aGACGACGUacgacaUGUUgGCAGCUugGUCACUGa -3'
miRNA:   3'- aUUGUUGCA------ACGA-CGUCGG--CGGUGGC- -5'
12705 3' -55 NC_003349.1 + 82222 0.66 0.894421
Target:  5'- ---gAACGUcuacgGCcGCcGCCGCCGCCu -3'
miRNA:   3'- auugUUGCAa----CGaCGuCGGCGGUGGc -5'
12705 3' -55 NC_003349.1 + 48731 0.67 0.860581
Target:  5'- cGACAAUGUUGUUaaaaacaaucuaugcGCuGCCGgCGCCa -3'
miRNA:   3'- aUUGUUGCAACGA---------------CGuCGGCgGUGGc -5'
12705 3' -55 NC_003349.1 + 16986 0.67 0.857411
Target:  5'- -cGCGAcCGUcGCcGguGuuGCCACCGa -3'
miRNA:   3'- auUGUU-GCAaCGaCguCggCGGUGGC- -5'
12705 3' -55 NC_003349.1 + 26075 0.67 0.841047
Target:  5'- cUGACAcACGcaaaaUUGCguaauuUGCcGCCGCCGCCGc -3'
miRNA:   3'- -AUUGU-UGC-----AACG------ACGuCGGCGGUGGC- -5'
12705 3' -55 NC_003349.1 + 16750 0.67 0.832559
Target:  5'- cGGCAcCGUcGC-GCAccGCCGCCGCCc -3'
miRNA:   3'- aUUGUuGCAaCGaCGU--CGGCGGUGGc -5'
12705 3' -55 NC_003349.1 + 17780 0.67 0.832559
Target:  5'- aAAC-AUGUUGCUGUAGCCGaacggaucCCACa- -3'
miRNA:   3'- aUUGuUGCAACGACGUCGGC--------GGUGgc -5'
12705 3' -55 NC_003349.1 + 100497 0.68 0.805964
Target:  5'- -uACAucCGUUGCUGguGUCGCCGaacUCGu -3'
miRNA:   3'- auUGUu-GCAACGACguCGGCGGU---GGC- -5'
12705 3' -55 NC_003349.1 + 26167 0.69 0.768205
Target:  5'- gUAACGGC--UGCUGCuGCUGCgGCUGa -3'
miRNA:   3'- -AUUGUUGcaACGACGuCGGCGgUGGC- -5'
12705 3' -55 NC_003349.1 + 59123 0.69 0.768205
Target:  5'- -cGCAACcau-CUGC-GCCGCCACCGc -3'
miRNA:   3'- auUGUUGcaacGACGuCGGCGGUGGC- -5'
12705 3' -55 NC_003349.1 + 82389 0.69 0.768205
Target:  5'- aGGCGACGcucagGCgGCGGCgGCgGCCGu -3'
miRNA:   3'- aUUGUUGCaa---CGaCGUCGgCGgUGGC- -5'
12705 3' -55 NC_003349.1 + 103615 0.69 0.758418
Target:  5'- -uACAAUccuGUUGCaauaUGCcgAGCCGCUACCGa -3'
miRNA:   3'- auUGUUG---CAACG----ACG--UCGGCGGUGGC- -5'
12705 3' -55 NC_003349.1 + 116612 0.7 0.718185
Target:  5'- cGGCGGCGguggcgGCUGCAGCaacguuGUUACCGa -3'
miRNA:   3'- aUUGUUGCaa----CGACGUCGg-----CGGUGGC- -5'
12705 3' -55 NC_003349.1 + 15610 0.7 0.697558
Target:  5'- -uACAugG-UGUcugUGUAGCCGCaCACCGa -3'
miRNA:   3'- auUGUugCaACG---ACGUCGGCG-GUGGC- -5'
12705 3' -55 NC_003349.1 + 102702 0.82 0.152202
Target:  5'- --cUAACGUUGgUGCAGCCGCgACCGa -3'
miRNA:   3'- auuGUUGCAACgACGUCGGCGgUGGC- -5'
12705 3' -55 NC_003349.1 + 116774 1.06 0.003732
Target:  5'- gUAACAACGUUGCUGCAGCCGCCACCGc -3'
miRNA:   3'- -AUUGUUGCAACGACGUCGGCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.