miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12705 5' -45.4 NC_003349.1 + 52022 0.66 0.999979
Target:  5'- uGCGGauccGACGguuUGGCUAUGACGUccUGAg -3'
miRNA:   3'- cUGCUa---CUGCa--AUUGAUGCUGCA--ACU- -5'
12705 5' -45.4 NC_003349.1 + 112991 0.66 0.999971
Target:  5'- aGGCGAUGAUGUacAUguugucuuauaUGCGACGUucacuUGAa -3'
miRNA:   3'- -CUGCUACUGCAauUG-----------AUGCUGCA-----ACU- -5'
12705 5' -45.4 NC_003349.1 + 47256 0.67 0.99996
Target:  5'- uGGCGGUGGCG---ACgACGACGUa-- -3'
miRNA:   3'- -CUGCUACUGCaauUGaUGCUGCAacu -5'
12705 5' -45.4 NC_003349.1 + 116615 0.67 0.99996
Target:  5'- cGGCGGUGGCGgcuGCaGCaACGUUGu -3'
miRNA:   3'- -CUGCUACUGCaauUGaUGcUGCAACu -5'
12705 5' -45.4 NC_003349.1 + 64076 0.67 0.999946
Target:  5'- cGACGAcaaUGACGagGACgacgACGACGacGAa -3'
miRNA:   3'- -CUGCU---ACUGCaaUUGa---UGCUGCaaCU- -5'
12705 5' -45.4 NC_003349.1 + 64884 0.67 0.999946
Target:  5'- -uCGAUGACGaauauuugaaUAACUACGAcacgcacaCGUUGAa -3'
miRNA:   3'- cuGCUACUGCa---------AUUGAUGCU--------GCAACU- -5'
12705 5' -45.4 NC_003349.1 + 126763 0.67 0.999905
Target:  5'- uGCGGUGAUGUUAACgaaACGcGCGUc-- -3'
miRNA:   3'- cUGCUACUGCAAUUGa--UGC-UGCAacu -5'
12705 5' -45.4 NC_003349.1 + 4184 0.68 0.999875
Target:  5'- aAUGAUGAUGUUAAUgaugAUGAUGUUa- -3'
miRNA:   3'- cUGCUACUGCAAUUGa---UGCUGCAAcu -5'
12705 5' -45.4 NC_003349.1 + 15913 0.68 0.999837
Target:  5'- aGACGAUGAUGaucgugaugaUUGAUUAUGACuUUGGu -3'
miRNA:   3'- -CUGCUACUGC----------AAUUGAUGCUGcAACU- -5'
12705 5' -45.4 NC_003349.1 + 96687 0.68 0.999837
Target:  5'- -uUGAUGGCGauaagUAACaUGCGGCGaUUGAa -3'
miRNA:   3'- cuGCUACUGCa----AUUG-AUGCUGC-AACU- -5'
12705 5' -45.4 NC_003349.1 + 83824 0.68 0.999655
Target:  5'- cGACGAuuUGACGUcgcgaaGAUUGuuguCGACGUUGAc -3'
miRNA:   3'- -CUGCU--ACUGCAa-----UUGAU----GCUGCAACU- -5'
12705 5' -45.4 NC_003349.1 + 104577 0.69 0.999316
Target:  5'- cGACGAUGuACG-UAGCgacgACGAgGUUGu -3'
miRNA:   3'- -CUGCUAC-UGCaAUUGa---UGCUgCAACu -5'
12705 5' -45.4 NC_003349.1 + 82308 0.7 0.998955
Target:  5'- aGCGGUGGCGguaGACgagGCGGCGguagGAg -3'
miRNA:   3'- cUGCUACUGCaa-UUGa--UGCUGCaa--CU- -5'
12705 5' -45.4 NC_003349.1 + 69818 0.7 0.99872
Target:  5'- -----cGAUGUUAACUaaaccgGCGGCGUUGAu -3'
miRNA:   3'- cugcuaCUGCAAUUGA------UGCUGCAACU- -5'
12705 5' -45.4 NC_003349.1 + 1478 0.7 0.99773
Target:  5'- uGACGGUGGCGgaggaGGCgGCGGCGgagGAg -3'
miRNA:   3'- -CUGCUACUGCaa---UUGaUGCUGCaa-CU- -5'
12705 5' -45.4 NC_003349.1 + 14753 0.71 0.99541
Target:  5'- uGACGAUGuugGUUAACUAgcgacgcugccguCGAUGUUGAc -3'
miRNA:   3'- -CUGCUACug-CAAUUGAU-------------GCUGCAACU- -5'
12705 5' -45.4 NC_003349.1 + 4215 0.72 0.990422
Target:  5'- uGAUGAUGAUGUUAAUgAUGAUGUUa- -3'
miRNA:   3'- -CUGCUACUGCAAUUGaUGCUGCAAcu -5'
12705 5' -45.4 NC_003349.1 + 42908 0.73 0.985715
Target:  5'- aGACGAUGACGacGACgACGACGa--- -3'
miRNA:   3'- -CUGCUACUGCaaUUGaUGCUGCaacu -5'
12705 5' -45.4 NC_003349.1 + 116740 1.11 0.025672
Target:  5'- aGACGAUGACGUUAACUACGACGUUGAc -3'
miRNA:   3'- -CUGCUACUGCAAUUGAUGCUGCAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.